| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1022 |
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| Symbol | |
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| ID | 4012143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 1048324 |
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| End bp | 1049793 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637940700 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_547873 |
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| Protein GI | 91786921 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.15714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.470087 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTCTTTG CGGCAGCGCT TTTTTCAGTC AAGGTCAGCA AATCTTGCGC CGTAGGCCCT
CATCCCAGCC TTCCCCCAGC GGGGGAAGGA GCAAGAAAAC GGGCCGAACG CGGCATTTGG
TGGCCCCATC TGCGGCCAGG GCTGATACCT TTGGTCGGCG TACCTTTGCT CCTGGGGTCA
TTTGGTGCTC TGGCTGACAA CTTACTGGAG GTTTACCGCA AGGCGCAGGA GCGAGACCCG
ACCTACCGCG GAGCAGTCCA TGCGCTGCAG GCGGCGCGTG AGCGGGTGCC CCAGGCGCGT
GCCGGGTTAA TGCCCGCCGT GAATCTGGTT GGTGCGACCA GCCAGCAATC AGGGCAGGCT
GCTTTCAGTG GGGCCCCTTA TGTAGACCGC AACGTGCGCA GCCGGAACTG GAATCTGCAA
CTGACACAGC CGCTGTGGCG CGCGGCCAGC TGGGTGGCCC TGAGCCAAGC CGAACAACAG
GAGTTGCTGG CCGAGGCACA GTTTCGGCAA ACCGAACAAG AGTTGATACT GCGCACGGCG
CAGGCCTATC TGGACGTGCT GGTGGCGCAG GAGGCCGAAC GCGTGGCGCG TCTGCAGATC
GGCGCTGTCG AACAGCAATT GGGCTTGGCG CGCCGTAACT TCGAGGTGGG CGTGGCGACG
GTGACTGATG TCCACGAGGC CAAGTCCCGG CTCGACCTGT CACGCGCTCA AGCGGTCGCT
GCAGCCAGCG AGACGGAGAA CAAGCGCGCT GAGCTTGCAC GCATCCTGGG AGACTCGGGA
GCGCGCCTGG CACGCTTGCA CGACAACGGC CGCTTGCCGG GTTTACAGCC CGAGACTGTC
CAACTCTGGG TGGAAAGTGC CCGCGAGCAG TCCCTGCAGG TGCGCATCGC CTTGGCGGCC
CTGGACGTGG CGGACCGGGA AATCGCCAAA CACCGGGCGA CTCATTTGCC CACTCTTGAC
TTGACGGCCG GCTATGGCAC TAACTTCACC TCCGGCAGTA TTACCTCGCC GGCGGATATT
GCAACCCGCA CACGCTCTGG TCAAGTCGGG CTGAATCTGA ACATCCCGCT TTACGCCGGC
GGTGGGGTCC AGGCACGCGT GCGCGAAGCC ACTGCCTTGA AAGACAAAGC GGGGGAGGAG
CTGGAGGCAG CTCGCCGGCA CGCGATCACG CAGGCGCGCC AGGCATTCTC TGGCGTCGTC
AATGGTGCGG CGCAGGTCGA GGCGCTGGAA TCTGCCATTT CCTCCAGCAA GAGTTCACTC
GATGCCAACA AGGTCGGCTA CCGCATCGGC ACGCGTATCA ATATTGATGT GCTGAACGCC
GAGCAGCAGC TTCATGCCGC TCAGCGCGAC TGGCACAAGG CGCGTGTCGA GACCCTGATG
CAGGGCCTGC GTTTGAAGGC CTCGAATGCA ACGCTGGGCG AGACGGATTT GCAAGCCATC
AATGATCTAT TGGAAACAGA AAAACCATGA
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| Protein sequence | MLFAAALFSV KVSKSCAVGP HPSLPPAGEG ARKRAERGIW WPHLRPGLIP LVGVPLLLGS
FGALADNLLE VYRKAQERDP TYRGAVHALQ AARERVPQAR AGLMPAVNLV GATSQQSGQA
AFSGAPYVDR NVRSRNWNLQ LTQPLWRAAS WVALSQAEQQ ELLAEAQFRQ TEQELILRTA
QAYLDVLVAQ EAERVARLQI GAVEQQLGLA RRNFEVGVAT VTDVHEAKSR LDLSRAQAVA
AASETENKRA ELARILGDSG ARLARLHDNG RLPGLQPETV QLWVESAREQ SLQVRIALAA
LDVADREIAK HRATHLPTLD LTAGYGTNFT SGSITSPADI ATRTRSGQVG LNLNIPLYAG
GGVQARVREA TALKDKAGEE LEAARRHAIT QARQAFSGVV NGAAQVEALE SAISSSKSSL
DANKVGYRIG TRINIDVLNA EQQLHAAQRD WHKARVETLM QGLRLKASNA TLGETDLQAI
NDLLETEKP
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