| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0611 |
|---|
| Symbol | |
|---|
| ID | 4011246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 619879 |
|---|
| End bp | 620616 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637940293 |
|---|
| Product | chaperone protein PmfD, putative |
|---|
| Protein accession | YP_547469 |
|---|
| Protein GI | 91786517 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000224808 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCC TGCAGCGCCG AAGCCACCTT CACCTTGTCA GCTTCCTCCT CCTGTTAAGT
CTCATGGCCC CCTGGGCCCC TGCCGCTGCT GGTGTTTTTT CCGTGACCCC CGTTCGGCTT
TACATGAAGC CCCGCGACCG GGCCATCGCC GTGACGCTGA CCAACGAAGC CGATACCGAA
GTCGTGCTGC AGGCCGACAT CAATACCTGG AGCCAGAAAC CGGACGGGAC CGATGAACTG
GTGCTCACCG AGGACCTGAT TCTGGCTCCT CCCATCATCA AGCTGGCGCC CAAAGCCAGG
CAGGTGGTGC GGCTCGCGTT GCTGAAGCCG GCCGATGCGA GCCGGCAACT GACTTACCGC
ATGATCATCC GCGAAGTACC TGAAGCCCTG CCCGCATCGG GCATTCAGGT CCCCATTGCG
CTGGCCCTGA GCATGCCCGT CTTCATCACG CCCCCGGCCG CCAAGCGCCA GATGAACTGC
AACACCGGCC GTGCGGACGC CAAAACCATC AGTCTGCAGT GCAGCAACAG CGGCACCGCC
TATGCGCAGA TCCGCGAGGC CGCGGTCATG CGCGGCGACC AGGCGCTGGC GCGGTTTGAG
GGCGGCAGCT ACATCCTGCC CGGCGCCAGC AAAACCATCA GCCTGCGCAG CGAGAAAGCC
GTCACCGCAG GCCCGGCGCA GCTGGTCGTG ACATTCGACG ACGGACAGAG CCTGACGACC
AGCATCACGC TGCCCTGA
|
|---|
| Protein sequence | MNVLQRRSHL HLVSFLLLLS LMAPWAPAAA GVFSVTPVRL YMKPRDRAIA VTLTNEADTE
VVLQADINTW SQKPDGTDEL VLTEDLILAP PIIKLAPKAR QVVRLALLKP ADASRQLTYR
MIIREVPEAL PASGIQVPIA LALSMPVFIT PPAAKRQMNC NTGRADAKTI SLQCSNSGTA
YAQIREAAVM RGDQALARFE GGSYILPGAS KTISLRSEKA VTAGPAQLVV TFDDGQSLTT
SITLP
|
|---|
| |