| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0604 |
|---|
| Symbol | |
|---|
| ID | 4011239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 610744 |
|---|
| End bp | 612690 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637940286 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_547462 |
|---|
| Protein GI | 91786510 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0571131 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACCA CGTTCCCACG ATTGCTGCTC AAACATGCTG CCGAGCGTCC GGGCGCCGCG
GCCATGCGCG AGAAAGAATA TGGCATCTGG CAGGCGCACA GCTGGGCCGG CATGGCCGAG
CTGGTGGAAC ACATTGCTTG CGGCCTGCAC GAGGCCGGCC TGGGGCGTGG CGAACACATG
GCGCTGATCG GTGCCAACCG GCCGCGCCTG TATGCCACCA TGCTGGCCGC GCAGTCGCTG
GGGGCGATTC CCATTCCGCT GTACCAGGAT GCCGTGGGCG CCGAATGCGT CTTCCCCATC
ACCAATGCCG ACGTACGCTT CGCCATGGTG GAAGACCAGG AGCAGGTCGA CAAGCTGCTG
GAAATCCGTG ACCGCTGCCC GGACCTGGCC CACATCATTT TTGACGACCC GCGCGGCCTG
CGCAATTACG AAGAGCCCGG ACTCACATCC CTGGACCGGC TGATTGAGTC CGGCCAGGCG
CTGGCGGTGA GCCAGCCTGG CTGGTTCCGC ATGGAAGTCG ACAAGGCCTC CCCCGACGAC
GTGGCGGCGA TGTTCTTTAC CTCGGGCACC ACCGGCAATC CCAAGGGCGT GGTGCACACG
CACGCGACCT TGCTGGACCG TGCGCAGGCC GGCGCAGAAT TTGACAAGCT CACGAGCGCC
GAAGAAGTGC TGGCCTACCT GCCGCCGGCG TGGATTGGCC AGAACATCTT CAGCTACGCG
CAGTGGCTGG CCTGCGGCTA TGTGGTGAAC TGCCCCGAGA GTGCCAGCAC GGTGATGATT
GACCTCAAGG AGGTCGGACC GACCTATTAC TTTGCGCCAC CGCGGGTGTT TGAAGGCATG
CTCACCACGG TCATGATCCG CATGGAGGAC GCCGGGCGCC TCAAGCGCGG CATGTTCAAT
TACTTCATGG GGGTGGCTCG CCAAGTGGGT CCCGCCCTCA TGGACGGCAA GCCGGTCAAT
TTCATCCAGA CCCTGCTTTA TGGCCTGGGC AACCTGATGG TCTACGGGCC CCTGCGCAAC
AACCTGGGCT TTTCGCGCGT GCGGGTGGCC TACACCGCCG GCGAAGCCAT TGGCCCGGAC
CTCTTCACTT TTTACCGTTC CATCGGCATC AACCTCAAGC AGCTGTATGG CTCCACGGAA
ACCGCCGTGT TCGTCTGCCT GCAGCCCGAC AACGAGGCGC GGGCCGACAC GGTCGGCGTG
CCGATTCAAG GCGTGCAGAT CCGGGTGGCC GACAACGGCG AGGTCCTGGT CAAGTCGGCC
GGCCTGCTCA AGGAGTACTA CAAAAATCCG GCGGCCACGG CCGAGGTGCT GACCGCCGAC
GGCTGGTACC ACACCAGCGA CGCCGGGTTT CTGAATGCCA GCGGTCATCT CAAGATCATT
GACCGGGTGA AGGACGTGGG CCGTATCAAG GGTGGCGCCA ATGACGGCGC CCTGTTTGCG
CCGAAATACG TGGAGAACAA GCTCAAGTTT TTCCCGCACA TCAAGGAAGT CGTGGCCTAC
GGCGACGGCC GTGAAAAGGT CTGCGTGATG ATCAACATCG ACTTCGACGC GGTGGGCAAC
TGGGCCGAGC GGCGCAACCT GCCTTATGCG GGCTACACCG ACCTGGCGCA AAAGCCGGAG
GTCTACCAGC TCATCAAGGA GTGCGTCGAG AAGGTCAATG CCGACCTCAG CGTCGATGCG
CTGCTGGCCG GCTCGCAGAT CAGCCGCTTC CTGATACTGC ACAAGGAACT CGACGCCGAT
GACGGCGAGC TGACACGGAC CAACAAGGTG CGCCGCGGCT TCATCGCCGA GAAATACCAG
CCGCTGGTCG ATGCCCTGTA CGGCGGCAAA ACCGAGCAGT TCATTGAAAC CGTGGTCAAG
TTTGAAGACG GCCGCAGCGG CAGCGTCAGC GCCACGCTGA AGATCAGCGA CACCCAAACC
TTCGCGCCCG TGAAGGCAGC AGCATGA
|
|---|
| Protein sequence | MQTTFPRLLL KHAAERPGAA AMREKEYGIW QAHSWAGMAE LVEHIACGLH EAGLGRGEHM
ALIGANRPRL YATMLAAQSL GAIPIPLYQD AVGAECVFPI TNADVRFAMV EDQEQVDKLL
EIRDRCPDLA HIIFDDPRGL RNYEEPGLTS LDRLIESGQA LAVSQPGWFR MEVDKASPDD
VAAMFFTSGT TGNPKGVVHT HATLLDRAQA GAEFDKLTSA EEVLAYLPPA WIGQNIFSYA
QWLACGYVVN CPESASTVMI DLKEVGPTYY FAPPRVFEGM LTTVMIRMED AGRLKRGMFN
YFMGVARQVG PALMDGKPVN FIQTLLYGLG NLMVYGPLRN NLGFSRVRVA YTAGEAIGPD
LFTFYRSIGI NLKQLYGSTE TAVFVCLQPD NEARADTVGV PIQGVQIRVA DNGEVLVKSA
GLLKEYYKNP AATAEVLTAD GWYHTSDAGF LNASGHLKII DRVKDVGRIK GGANDGALFA
PKYVENKLKF FPHIKEVVAY GDGREKVCVM INIDFDAVGN WAERRNLPYA GYTDLAQKPE
VYQLIKECVE KVNADLSVDA LLAGSQISRF LILHKELDAD DGELTRTNKV RRGFIAEKYQ
PLVDALYGGK TEQFIETVVK FEDGRSGSVS ATLKISDTQT FAPVKAAA
|
|---|
| |