| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0558 |
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| Symbol | |
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| ID | 4010981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 556809 |
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| End bp | 558101 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637940240 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_547416 |
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| Protein GI | 91786464 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.325527 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATCG GACTGTTTGG AATTGCATTC GTCGTGATGC TTGGCATGAT GCTGGTCGGC
ATTCCGATCG CCGTCTCGAT GGCGGCGGTG GGGATCGTGG GGGGCATCGC CGCTTACGGC
ATCCCCTTCA TGGACTCGAT CGCGCCCGTG GTCTGGGGTG TGCACAACGA GAACCTGCTG
ACCTCGATCC CGCTGTTCAT CCTGCTGGGC GAGTTGCTGC TGCGCTCGGG CATTGCCGAT
CGCATGTACA TTGCCCTGTC GGCCTGGCTC GGGCGCCTGC CGGGCGGCCT GCTGCATACC
AACATCGGCA GTTGCGCGCT GTTCGCCGCG ACCTCCGGTT CGTCGGTGGC CACGGCGGCT
ACCGTGGGTA CCGTTGCGCT GCCGTCCCTG CAAAAACGCG GCTACCCCAT GCGCGCCTCG
CTGGGCACGC TGGCAGCGGG CGGCACCCTG GGCATCCTGA TCCCGCCCAG CGTGAACATG
ATCGTCTACG GCTCGCTGAC CAACAACTCG ATCGGCAAGC TCTTCATCGC CGGCATCATT
CCCGGTCTGA TGCTGACGGG CTGCTTCATG CTCTACATCG CCGTGTCGTC GCTGATGAGC
GGTAACGCCA TGCGTGAGCC CAAGGTGCCG ATGGCCGACA AGCTGCGCTC GCTGGTGCAT
CTGGTGCCGC CCATGGTCGT GTTCGGCATC GTGATGGGCA GCCTGTACTT CGGCATTGCC
ACCACCACCG AAAGCGCGGC GCTGGGCGTG ATCGCGGCCC TGGGCTTTGT GGTGCACTCG
GGCAAGATGA GCCGCGAACT GCTGCGCACC TGCTTCATCT CCACGGCGCG CGTCAGCGGC
ATGATCCTGC TGATCATCAC CGCAGCCTTC ATCCTCAACC TGACCATCAG CCTGACCGGC
GTCGCCGAGG CGATGACCAA GTGGGTGGCG GGCCTGGGCC TGTCGGCAAC TGGGCTGATC
CTGGCGCTGA TCGTGTTCTA CCTGATTCTC GGCATGTTCA TGGATGTGCT GTCGATGCAG
GTGGCGACCA TCCCGATCAC CTACCCGATC GCTACGGCGC TGGGCGTGGA CCCGATCTGG
TTCGGTATCT TCATCGTGCT GATGTGCGAG CTGGGGCTGA TCACGCCACC GGTGGGCATG
AACCTGTTCG TGGTGCACGG CATCCGGCCC GACAAGGGCG GCATCGAGGA CGCGATCTGG
GGGGCGCTGC CCTACGCCCT GATCATGATC CTGTTCACCT TGCTCATCAT GGTGTGGCCG
CAGATTGTCA CCTGGCTGCC GGCCCACATG TGA
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| Protein sequence | MSIGLFGIAF VVMLGMMLVG IPIAVSMAAV GIVGGIAAYG IPFMDSIAPV VWGVHNENLL
TSIPLFILLG ELLLRSGIAD RMYIALSAWL GRLPGGLLHT NIGSCALFAA TSGSSVATAA
TVGTVALPSL QKRGYPMRAS LGTLAAGGTL GILIPPSVNM IVYGSLTNNS IGKLFIAGII
PGLMLTGCFM LYIAVSSLMS GNAMREPKVP MADKLRSLVH LVPPMVVFGI VMGSLYFGIA
TTTESAALGV IAALGFVVHS GKMSRELLRT CFISTARVSG MILLIITAAF ILNLTISLTG
VAEAMTKWVA GLGLSATGLI LALIVFYLIL GMFMDVLSMQ VATIPITYPI ATALGVDPIW
FGIFIVLMCE LGLITPPVGM NLFVVHGIRP DKGGIEDAIW GALPYALIMI LFTLLIMVWP
QIVTWLPAHM
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