Gene Bpro_0490 details

Gene Information

• Locus tag: Bpro_0490
• Symbol: rplF
• ID: 4010970
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Polaromonas sp. JS666
• Kingdom: Bacteria
• Replicon accession: NC_007948
• Strand: +
• Start bp: 505166
• End bp: 505699
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637940175
• Product: 50S ribosomal protein L6
• Protein accession: YP_547352
• Protein GI: 91786400
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00133523
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCTCGTG TAGGAAAAAT GCCGGTTACC CTGCCCCAGG GCGTGGACGT GGCAATCAAA 
GACGACCAGA TTAATGTCAA GGGCGCCCTC GGTGCCCTGG CGCTGACGCA AAACGCGCTT 
GTCACCATCA AGAATGATGC CGGCAAGCTG ACTTTTGCGC CTGCCAACGA CTCGCGTGAA 
GCCAATGCCA TGAGCGGGAC GATGCGCCAG CTCGTGAACA ACATGGTGAC GGGCGTGACC 
AAGGGCTTTG AGAAAAAGCT CAGCCTGATC GGTGTGGGTT ACAAGGCCCA GGCGCAAGGC 
GCCAAGCTGA ACCTGACCGT GGGTTACTCG CATCCTGTGA TCATGGACAT GCCTGCTGGC 
ATCACTGTCG CAACCCCAAC CCCCACCGAG GTGGTGATCA AGGGTTCTGA CCGTCAGCGT 
GTAGGCCAGA TTGCCGCGGA AGTGCGTGCA GTTCGTCCTC CCGAGCCTTA CAAGGGCAAG 
GGCATCCGTT ATGCGGATGA GAAGATCACG ATCAAAGAAA CCAAGAAGAA ATAA 

 

Protein sequence

MSRVGKMPVT LPQGVDVAIK DDQINVKGAL GALALTQNAL VTIKNDAGKL TFAPANDSRE 
ANAMSGTMRQ LVNNMVTGVT KGFEKKLSLI GVGYKAQAQG AKLNLTVGYS HPVIMDMPAG 
ITVATPTPTE VVIKGSDRQR VGQIAAEVRA VRPPEPYKGK GIRYADEKIT IKETKKK