Gene Bpro_0428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_0428 
Symbol 
ID4011529 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp443109 
End bp446078 
Gene Length2970 bp 
Protein Length989 aa 
Translation table11 
GC content65% 
IMG OID637940113 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_547290 
Protein GI91786338 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACATCCA GCCTGCCCAC CATCCCACCC AGCGCAGCAG TAGCCGCTGC ATCCGGCACC 
AGCATGGTGC CCCTGTCCGA GCCTGACTTT GACGGGCTGG TCCAGCTGGC CGCGCGGTTC
TGCGGAACTG GCGCGGCCAT CCTGCATCTG GCGGGCGAAG AGACGACTTC ATCCTCATGG
TCAGTGGGCC TTCCGGAGAA GGCCGACAGC CTGGCAGATT TTTACGCCCA GGTTCTGCTG
CGTGGCGGAC AGCCCCTGAC CATCACCGAC GCCGCAACGG ACCCGACCCT GTCCCGCCAC
CCGCTGGTGG CCGGTCCGGC AGGCCTGCGC TTTTTCGCGG CCGTCCCGCT TATTGCGTCC
GATGGCACGC CGCTGGGCGT GCTGGCCGTC ATGGACGCCG CTGCGCGCGC GTGCCGGGAC
GGTGACCTGG ACGCACTCAA CATTCTGGGC CGGCAGGTGG TGGCGCAGCT GGACCTCAGG
CGCCAGCACA AGTTCCTTGC GGACCGTAGC GCAGAACGCG AACAGCAGAG CCGGATGCGC
CTGCAGCACA GTGAGAACCG CCTGCACATC GCCATGCGCA CCGCGCAGAT GGGCAATTGG
TCGCTGAACC TCGCGGACGA CAGCCTGACA CTGTCATCCG AGTTCCCGGC CATTCTCGGC
ACCAGCGCTG CCATGCCGCA GACACTCGAG GAACTGCTGC TCCACTACGC GGCTGAATCG
CGCGGCAGAC TCCGCCACGT TATCAGCGAA TGCGCGCGCA AGGGCACGCC CTTCGATGAG
GAGGCCCAGA TGCTGACGGC GCAGGACGGC CGGCGGTGGG TGCGGATCAT CGGCGAAGTC
GTGCGGGACG GCCAAGGGGC AATCACGCGC ATCCAGGGCG CCTTGCAGGA CATCAACGCC
AGGAAACAGG CGCAGGAGGA AACCCTGCGC CTGGCCATGC GCCTGACCAC GACGCTGGCC
AGCATCACCG AGGCCTTTGT GACGCTGGAC CGGGAGGGCC GCTTTACCTA CCTCAACCAG
GAGAGCGAGC GGCTGCTGCA GCGTTCGACC GCCGAATTGC TGGGTCAGGA GATCTGGCAG
GATTTCGGCG AGGAGGTGAG CGGCCGGCTG CGCCAGCACA TCCAGCGGGC GCTGGCCACG
AACCGCCAGG TGGAGTTCGA GTATTTTGAT GCGCCGCTCG GCAAGTGGCT GGAAGTACGC
GCCTATCCGT TTGCCGAGGG ACTGGCGGTC TACTTTCGCG ATGTCAGCGA GCGGCGAAAC
TCCCAGGAGC AGCTGATGCT GCTGGAGACC GGCATCGCGC GGCTGAACGA CATTGTGGTC
ATCGTCGAGG CGTCGCCGCA TCACGGGTCA GGGCCGCAGA TCGTCTTCGT CAATGACGCC
TTCGAGCGGC ACACCGGCTA CACCCGCGAC GAGGTGCTGA GCCGAATGCC GGGCATGCTG
CAGGGGCCTG GCACGCGGCA AGACGAACTC GCCCGCATCT TCAGCGCACT GCAGCAATGG
AAACAGGCAC GCGGCGAGCT GGTGATCTAC CGCAAGGATG GCGGGTCGTT CTGGGTGGAT
CTGGAAATCG TCTCGGTGGC TGCCCAAAAC GGCGATCTGA CCCACTGGGT CGCCGTGGGC
CGCGACATTA CCCAGCGCAA GGCGGCCGAC GAGAAGATCC ATCATCTCGC CTTCTACGAT
CCACTGACCG AGCTGCCCAA CCGCCAATTG CTGCTGGACC GGCTGGAACA GGCGCTGGCG
GACTGCACCA TTACCCGGCA GGAAGGTGTC CTGATGTTCA TCGACCTGGA CAACTTCAAG
ATCCTCAACG ACACCGTGGG CCACTCGAAG GGCGACCTGC TGCTGCAGAA GGTGGCAGTG
CGCCTGAAGG GATGCGTGCG CAAGCTCGAT ACCGTGGCGC GCCTGGGTGG CGACGAGTTT
GTGGTGATGC TGCAGGACCT GGGCACGCAG CCCGAAGCGG CGACCCGCAA GGCCCAGATC
GTGGCCGAAA AAGTGCTGGC CACCCTGCGT GAACCCTATG ACCTGGCGGG CTATCAGCAC
TACAGCACCT CCAGCATCGG GGTAACGCCC TTCAATGCAC GGCAAGGCAG TGTCAGCGAA
CTGCTCAAGC AGGCCGATCT GGCGATGTAC CAGGCCAAGA CCATGGGCCG CAACACCGTC
TGCTTTTTCG ATCCGGACAT GCAGGCCTCC GTCAGCGCCA ACGCCGCCCT GAGCACCGAC
CTGCGCGCCG GCCTGCGGGA ACACCAGTTC CTGGTTCACT ACCAGCCGCA GGTCGACCGC
GAGCAGCGCA TCACCGGCGT CGAAGCGCTG CTGCGCTGGA AGCATCCGCA GCGTGGCATG
GTGAGCCCGG CGGAGTTCAT TCCGGTGGCC GAAGAGACGG GCCTGATACT GCCGCTGGGT
CAATGGGTGC TGGAGCAAGC CTGCCTGCAG CTGGCGGTCT GGCAGAAACG GCCTGAAACG
GCAGGCCTGA GCATTGCCGT CAACGTGAGC GTGCGGCAGT TCCGCCACCC CGACTTCGTG
GACATGGTGA TGGCTGCGAT CAAGCATACC GGCATCCAGC CCCACAACCT CAAGCTCGAG
TTGACGGAGA GCCTGCTGGC CGACCGCATG GAGATCGCCA TCGCCAAGAT GGGCACGCTC
AAGGCGCTGG GCGTGACCCT GGCGCTGGAC GACTTCGGCA TGGGCTACTC CTCGCTGTCC
TACCTCAAGC GGCTACCGCT GGACCAATTG AAGATCGACA AGAGCTTCAT TGCGGACGTC
TTCAGCGACC CGAACGACGC TGCCATCTGC AGCGCCATCA TTTCGCTGGC GCAAAGCCTG
GGACTCGATG TGATTGCCGA AGGCGTCGAG ACCGAGGCAC AACGCAGCTT TCTGGCCGGG
CTGGGTTGCG GCTACTACCA GGGCTTTCTG TTCTGCCCGC CGCTGCCCAT CGCCGAGTTC
GAGGCCTTCA TGCAGGGTGC AGCACCCTGA
 
Protein sequence
MTSSLPTIPP SAAVAAASGT SMVPLSEPDF DGLVQLAARF CGTGAAILHL AGEETTSSSW 
SVGLPEKADS LADFYAQVLL RGGQPLTITD AATDPTLSRH PLVAGPAGLR FFAAVPLIAS
DGTPLGVLAV MDAAARACRD GDLDALNILG RQVVAQLDLR RQHKFLADRS AEREQQSRMR
LQHSENRLHI AMRTAQMGNW SLNLADDSLT LSSEFPAILG TSAAMPQTLE ELLLHYAAES
RGRLRHVISE CARKGTPFDE EAQMLTAQDG RRWVRIIGEV VRDGQGAITR IQGALQDINA
RKQAQEETLR LAMRLTTTLA SITEAFVTLD REGRFTYLNQ ESERLLQRST AELLGQEIWQ
DFGEEVSGRL RQHIQRALAT NRQVEFEYFD APLGKWLEVR AYPFAEGLAV YFRDVSERRN
SQEQLMLLET GIARLNDIVV IVEASPHHGS GPQIVFVNDA FERHTGYTRD EVLSRMPGML
QGPGTRQDEL ARIFSALQQW KQARGELVIY RKDGGSFWVD LEIVSVAAQN GDLTHWVAVG
RDITQRKAAD EKIHHLAFYD PLTELPNRQL LLDRLEQALA DCTITRQEGV LMFIDLDNFK
ILNDTVGHSK GDLLLQKVAV RLKGCVRKLD TVARLGGDEF VVMLQDLGTQ PEAATRKAQI
VAEKVLATLR EPYDLAGYQH YSTSSIGVTP FNARQGSVSE LLKQADLAMY QAKTMGRNTV
CFFDPDMQAS VSANAALSTD LRAGLREHQF LVHYQPQVDR EQRITGVEAL LRWKHPQRGM
VSPAEFIPVA EETGLILPLG QWVLEQACLQ LAVWQKRPET AGLSIAVNVS VRQFRHPDFV
DMVMAAIKHT GIQPHNLKLE LTESLLADRM EIAIAKMGTL KALGVTLALD DFGMGYSSLS
YLKRLPLDQL KIDKSFIADV FSDPNDAAIC SAIISLAQSL GLDVIAEGVE TEAQRSFLAG
LGCGYYQGFL FCPPLPIAEF EAFMQGAAP