Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_0428 |
Symbol | |
ID | 4011529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | - |
Start bp | 443109 |
End bp | 446078 |
Gene Length | 2970 bp |
Protein Length | 989 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637940113 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_547290 |
Protein GI | 91786338 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACATCCA GCCTGCCCAC CATCCCACCC AGCGCAGCAG TAGCCGCTGC ATCCGGCACC AGCATGGTGC CCCTGTCCGA GCCTGACTTT GACGGGCTGG TCCAGCTGGC CGCGCGGTTC TGCGGAACTG GCGCGGCCAT CCTGCATCTG GCGGGCGAAG AGACGACTTC ATCCTCATGG TCAGTGGGCC TTCCGGAGAA GGCCGACAGC CTGGCAGATT TTTACGCCCA GGTTCTGCTG CGTGGCGGAC AGCCCCTGAC CATCACCGAC GCCGCAACGG ACCCGACCCT GTCCCGCCAC CCGCTGGTGG CCGGTCCGGC AGGCCTGCGC TTTTTCGCGG CCGTCCCGCT TATTGCGTCC GATGGCACGC CGCTGGGCGT GCTGGCCGTC ATGGACGCCG CTGCGCGCGC GTGCCGGGAC GGTGACCTGG ACGCACTCAA CATTCTGGGC CGGCAGGTGG TGGCGCAGCT GGACCTCAGG CGCCAGCACA AGTTCCTTGC GGACCGTAGC GCAGAACGCG AACAGCAGAG CCGGATGCGC CTGCAGCACA GTGAGAACCG CCTGCACATC GCCATGCGCA CCGCGCAGAT GGGCAATTGG TCGCTGAACC TCGCGGACGA CAGCCTGACA CTGTCATCCG AGTTCCCGGC CATTCTCGGC ACCAGCGCTG CCATGCCGCA GACACTCGAG GAACTGCTGC TCCACTACGC GGCTGAATCG CGCGGCAGAC TCCGCCACGT TATCAGCGAA TGCGCGCGCA AGGGCACGCC CTTCGATGAG GAGGCCCAGA TGCTGACGGC GCAGGACGGC CGGCGGTGGG TGCGGATCAT CGGCGAAGTC GTGCGGGACG GCCAAGGGGC AATCACGCGC ATCCAGGGCG CCTTGCAGGA CATCAACGCC AGGAAACAGG CGCAGGAGGA AACCCTGCGC CTGGCCATGC GCCTGACCAC GACGCTGGCC AGCATCACCG AGGCCTTTGT GACGCTGGAC CGGGAGGGCC GCTTTACCTA CCTCAACCAG GAGAGCGAGC GGCTGCTGCA GCGTTCGACC GCCGAATTGC TGGGTCAGGA GATCTGGCAG GATTTCGGCG AGGAGGTGAG CGGCCGGCTG CGCCAGCACA TCCAGCGGGC GCTGGCCACG AACCGCCAGG TGGAGTTCGA GTATTTTGAT GCGCCGCTCG GCAAGTGGCT GGAAGTACGC GCCTATCCGT TTGCCGAGGG ACTGGCGGTC TACTTTCGCG ATGTCAGCGA GCGGCGAAAC TCCCAGGAGC AGCTGATGCT GCTGGAGACC GGCATCGCGC GGCTGAACGA CATTGTGGTC ATCGTCGAGG CGTCGCCGCA TCACGGGTCA GGGCCGCAGA TCGTCTTCGT CAATGACGCC TTCGAGCGGC ACACCGGCTA CACCCGCGAC GAGGTGCTGA GCCGAATGCC GGGCATGCTG CAGGGGCCTG GCACGCGGCA AGACGAACTC GCCCGCATCT TCAGCGCACT GCAGCAATGG AAACAGGCAC GCGGCGAGCT GGTGATCTAC CGCAAGGATG GCGGGTCGTT CTGGGTGGAT CTGGAAATCG TCTCGGTGGC TGCCCAAAAC GGCGATCTGA CCCACTGGGT CGCCGTGGGC CGCGACATTA CCCAGCGCAA GGCGGCCGAC GAGAAGATCC ATCATCTCGC CTTCTACGAT CCACTGACCG AGCTGCCCAA CCGCCAATTG CTGCTGGACC GGCTGGAACA GGCGCTGGCG GACTGCACCA TTACCCGGCA GGAAGGTGTC CTGATGTTCA TCGACCTGGA CAACTTCAAG ATCCTCAACG ACACCGTGGG CCACTCGAAG GGCGACCTGC TGCTGCAGAA GGTGGCAGTG CGCCTGAAGG GATGCGTGCG CAAGCTCGAT ACCGTGGCGC GCCTGGGTGG CGACGAGTTT GTGGTGATGC TGCAGGACCT GGGCACGCAG CCCGAAGCGG CGACCCGCAA GGCCCAGATC GTGGCCGAAA AAGTGCTGGC CACCCTGCGT GAACCCTATG ACCTGGCGGG CTATCAGCAC TACAGCACCT CCAGCATCGG GGTAACGCCC TTCAATGCAC GGCAAGGCAG TGTCAGCGAA CTGCTCAAGC AGGCCGATCT GGCGATGTAC CAGGCCAAGA CCATGGGCCG CAACACCGTC TGCTTTTTCG ATCCGGACAT GCAGGCCTCC GTCAGCGCCA ACGCCGCCCT GAGCACCGAC CTGCGCGCCG GCCTGCGGGA ACACCAGTTC CTGGTTCACT ACCAGCCGCA GGTCGACCGC GAGCAGCGCA TCACCGGCGT CGAAGCGCTG CTGCGCTGGA AGCATCCGCA GCGTGGCATG GTGAGCCCGG CGGAGTTCAT TCCGGTGGCC GAAGAGACGG GCCTGATACT GCCGCTGGGT CAATGGGTGC TGGAGCAAGC CTGCCTGCAG CTGGCGGTCT GGCAGAAACG GCCTGAAACG GCAGGCCTGA GCATTGCCGT CAACGTGAGC GTGCGGCAGT TCCGCCACCC CGACTTCGTG GACATGGTGA TGGCTGCGAT CAAGCATACC GGCATCCAGC CCCACAACCT CAAGCTCGAG TTGACGGAGA GCCTGCTGGC CGACCGCATG GAGATCGCCA TCGCCAAGAT GGGCACGCTC AAGGCGCTGG GCGTGACCCT GGCGCTGGAC GACTTCGGCA TGGGCTACTC CTCGCTGTCC TACCTCAAGC GGCTACCGCT GGACCAATTG AAGATCGACA AGAGCTTCAT TGCGGACGTC TTCAGCGACC CGAACGACGC TGCCATCTGC AGCGCCATCA TTTCGCTGGC GCAAAGCCTG GGACTCGATG TGATTGCCGA AGGCGTCGAG ACCGAGGCAC AACGCAGCTT TCTGGCCGGG CTGGGTTGCG GCTACTACCA GGGCTTTCTG TTCTGCCCGC CGCTGCCCAT CGCCGAGTTC GAGGCCTTCA TGCAGGGTGC AGCACCCTGA
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Protein sequence | MTSSLPTIPP SAAVAAASGT SMVPLSEPDF DGLVQLAARF CGTGAAILHL AGEETTSSSW SVGLPEKADS LADFYAQVLL RGGQPLTITD AATDPTLSRH PLVAGPAGLR FFAAVPLIAS DGTPLGVLAV MDAAARACRD GDLDALNILG RQVVAQLDLR RQHKFLADRS AEREQQSRMR LQHSENRLHI AMRTAQMGNW SLNLADDSLT LSSEFPAILG TSAAMPQTLE ELLLHYAAES RGRLRHVISE CARKGTPFDE EAQMLTAQDG RRWVRIIGEV VRDGQGAITR IQGALQDINA RKQAQEETLR LAMRLTTTLA SITEAFVTLD REGRFTYLNQ ESERLLQRST AELLGQEIWQ DFGEEVSGRL RQHIQRALAT NRQVEFEYFD APLGKWLEVR AYPFAEGLAV YFRDVSERRN SQEQLMLLET GIARLNDIVV IVEASPHHGS GPQIVFVNDA FERHTGYTRD EVLSRMPGML QGPGTRQDEL ARIFSALQQW KQARGELVIY RKDGGSFWVD LEIVSVAAQN GDLTHWVAVG RDITQRKAAD EKIHHLAFYD PLTELPNRQL LLDRLEQALA DCTITRQEGV LMFIDLDNFK ILNDTVGHSK GDLLLQKVAV RLKGCVRKLD TVARLGGDEF VVMLQDLGTQ PEAATRKAQI VAEKVLATLR EPYDLAGYQH YSTSSIGVTP FNARQGSVSE LLKQADLAMY QAKTMGRNTV CFFDPDMQAS VSANAALSTD LRAGLREHQF LVHYQPQVDR EQRITGVEAL LRWKHPQRGM VSPAEFIPVA EETGLILPLG QWVLEQACLQ LAVWQKRPET AGLSIAVNVS VRQFRHPDFV DMVMAAIKHT GIQPHNLKLE LTESLLADRM EIAIAKMGTL KALGVTLALD DFGMGYSSLS YLKRLPLDQL KIDKSFIADV FSDPNDAAIC SAIISLAQSL GLDVIAEGVE TEAQRSFLAG LGCGYYQGFL FCPPLPIAEF EAFMQGAAP
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