Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_0416 |
Symbol | |
ID | 4011556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | - |
Start bp | 429121 |
End bp | 430149 |
Gene Length | 1029 bp |
Protein Length | 342 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637940101 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_547278 |
Protein GI | 91786326 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGTCG TCTACAGCGA TCAGCACAAA GACCACGACC CGCAGCTCTT CATGGTGCGC GGTCGATTGA AGCGCAGCAA CGAACAGCCG GAACGCGCCT TTCGCCTGCT GTCGGCGGTC CAGGAAGGTG GCCATGACGT CATCGCCTGC GAAGACTTCG GCGCGGGCCC GCGTGCCGCC ATCCACACGC CGGAGTACCT GCGCTTTCTC GAAACCGCTT ACGAGCGATG GCAAGGGCTG GACGACCCCT CGCAAGAGGT CATGCCCAAC ATCCATCCCT TTCCCGGCGA GCCCTGCACC TACCCCGAGA GCGTGGTGGG CCAGGCCGGA TTCCACATGG GAGACAACGC CTGCTCCATC GGCCCGCATA CCTGGCAGGC GGCCACCGCC TCGGCCCACG TGGCCACGCA TGCCGCGCAG CTGGTGGCGG ACGGCGAGCG CGCGGCCTAC GCGCTGTGCC GCCCACCGGG CCACCATGCC TACGCGGACC GGGCGAACGG CTTTTGCTAC CTGAACAACG TGGCCATCGC CGCGCAGCAC CTGCGCCGGG TGCACGACCG CGTCGCCATT CTCGACATCG ACGTGCACCA CGGCAACGGC ACGCAGGGCA TCTTCTACCG CCGCCCGGAC GTACTGACCA TTTCACTGCA TGGCGACCCG CGCAACTTCA CGCCCTTCTT CACCGGCCAT GCGCACGAGC GGGGTGAAGG CGCAGGCCTG GGCTACAACA TCAACAAGCC GCTGGCGCTG GGCACCGGCA TCGACGGCTA CCTGCCGGCG TTGCGCGATG CCTGCCTGAG CGTGCGCGCC TTCGCGCCCG GCGCGCTGGT GGTGGCGCTG GGCCTGGACG CGCACGAGCA CGACCCGTAC AAGGGCATGA AGATCACAAC GCCCGGCTTC GCGCTGCTGC TCGCCGAGAT CGCCCGCCTG GGCCTGCCGA CCGTGCTGGT GCAGGAAGGG GGCTACCTGT CCGACGACCT CGGCCCCAAT CTCGCCAGCG CACTGCGCGG CTTTGCGGGC GTGGCATGA
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Protein sequence | MKVVYSDQHK DHDPQLFMVR GRLKRSNEQP ERAFRLLSAV QEGGHDVIAC EDFGAGPRAA IHTPEYLRFL ETAYERWQGL DDPSQEVMPN IHPFPGEPCT YPESVVGQAG FHMGDNACSI GPHTWQAATA SAHVATHAAQ LVADGERAAY ALCRPPGHHA YADRANGFCY LNNVAIAAQH LRRVHDRVAI LDIDVHHGNG TQGIFYRRPD VLTISLHGDP RNFTPFFTGH AHERGEGAGL GYNINKPLAL GTGIDGYLPA LRDACLSVRA FAPGALVVAL GLDAHEHDPY KGMKITTPGF ALLLAEIARL GLPTVLVQEG GYLSDDLGPN LASALRGFAG VA
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