| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0310 |
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| Symbol | |
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| ID | 4011642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 334155 |
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| End bp | 335978 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637939995 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_547173 |
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| Protein GI | 91786221 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein
[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.120997 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCGA ACTTCTCAAT AATCGCTGCG GCCGTGTTGA CGAGCCTGGC AGCGCAGGCA
CAGACATTGC CCGAGCCCAT GATTGACGCA GCACGCAAGG CGGTAGTCAG CAACCCCGAG
GTGCAGGCCC GCTGGCACGG CTTCCAGGCT GCCGGCAACG AGCGAGACGT GGCCCGTGGC
GGCTACTTTC CCCAGATCGA CCTGCGCGCC GGCACCGGCC GCGAGAGCCG CGAGACGCCA
TTGACCGACT ATGGCCGTTA CAACTTCCGT GGCACGACGC TCACGCTCAA CCAGATGCTG
TTTGACGGGC TGTTCACGCC CAACGAAGTC AAGCGCCTGG GCTACGCCAA GCTCACCCGC
TACTACGAAC TGCAGGAAGT CTCCGAGACC GCCGCGCTCG AAGCCGTGCG CGCCTACGCC
GACGTCGTGC GCTACCGCGA GCTGGTCGAT ACGGCCACGC AAAACTACGT CGTGCACAAG
CAGACCACCG GCCAGGTCGA AGAGCGCTCC AGTGCCGGCG TGGGCCGCCG CGTCGACGTC
GAGCAGGCCA CCGGCCGTCT CGCGCTGGCC GAGGCCAACC TGCTGACCGA GCTGACCAAC
TTGCACGATG TGAGTGCACG CTACCTGCGC ATTGTTGGCG AGAAGCCGCC GGAGGCCCTG
CCCAAGCTGC CCGCCAAGTT TCAGATCGGC CCCATGCCCG CCTCCACCGA AATGTTGATG
AAAGACGGCC TGCCCAACAG CCCCACCATC AATGCCGCGC TGGAGAACGT GCGCTCCATG
AAAACGGCCA TCGCCTCACG CAAGGCCGCC TACATGCCGC GCGTGGACCT GCGGCTGTAT
GACTCGCGGG ACCGCAACCT GCAGGGCGTG ACCGGCACCA CCCGCGTCAA TGGCATCGAG
CTGGTGCTCA ACTACAACCT GTTTCGCGGC GGCGCCGACA AGGCGCGCGA GCGCCAGGCG
GTCGACCTGC ACGAGCAGGC GCGCGACCTG AAGGAAAAGG CCTGCCGCGA CGTGCGCCAG
ACCCTGTCGA TCGCCTTCAG CGATGTGAGA ACCCTCAACG AGCAGCTGGC CTACCGCGAC
CAGCACCGGC TGTCGACCGA GAAATCGCGC GAAGCCTACC TGCAGCAGTT CGAGCTGGGC
CAGCGCACGC TGCTGGACCT GCTGGACAGC CAGAACGAAT ACTTCCAGGC CAACCGCTCC
TACGTCAACG CCAGCTACGA CCAGATCATT GCGCAGGCGC GCACGCTGGC GGGCATGGGG
CAGTTGGTGA CGGCGCTCAA CGTCAAGCGC GGCGATGTGC CCAGCGCCCA GGATGCCGGG
CAGGACCGCA CCGGCATCGA CCCGGCCGAG CTGTGCCCGC AGGATGAGAC CGTGGTCGAT
ACCATGGAGA AAATCAAGGC GGGGACGGTC ATTCCGCCGC GCGCACGTGC GACGGTGGCA
CCCGCACCCG GACAGGCGCT TCCCGCCAAG ATCAGCTTGT CGGCCGATAC GCTGTTTGAC
TTTGACAAGT CGACCATCAA GGCCGGTGGC ACGGGCAAGC TCGACGCGCT GGTGGACCGC
CTCAAGGGCG TCAACGTCGA CGTGGTGATC GCCGTGGGCC ATACCGATTC CGTGGGCACG
GATGCCTACA ACCAGCGCCT GTCACTGGCA CGCGCCGATT CGGTCAAGGC CTACCTGGTC
AGCAAAGGCG TGGATCGCCA GCGCATTCGT ACCGAGGGGC GCGGTGAAAG CCAGCCAGTG
GCCGACAACG CCACGGCAGA AGGCCGCGCC AAAAACCGCC GTGTGGACAT TGAAGTGGTA
GAGGCACGGC CTGCAGCCAA ATAA
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| Protein sequence | MKANFSIIAA AVLTSLAAQA QTLPEPMIDA ARKAVVSNPE VQARWHGFQA AGNERDVARG
GYFPQIDLRA GTGRESRETP LTDYGRYNFR GTTLTLNQML FDGLFTPNEV KRLGYAKLTR
YYELQEVSET AALEAVRAYA DVVRYRELVD TATQNYVVHK QTTGQVEERS SAGVGRRVDV
EQATGRLALA EANLLTELTN LHDVSARYLR IVGEKPPEAL PKLPAKFQIG PMPASTEMLM
KDGLPNSPTI NAALENVRSM KTAIASRKAA YMPRVDLRLY DSRDRNLQGV TGTTRVNGIE
LVLNYNLFRG GADKARERQA VDLHEQARDL KEKACRDVRQ TLSIAFSDVR TLNEQLAYRD
QHRLSTEKSR EAYLQQFELG QRTLLDLLDS QNEYFQANRS YVNASYDQII AQARTLAGMG
QLVTALNVKR GDVPSAQDAG QDRTGIDPAE LCPQDETVVD TMEKIKAGTV IPPRARATVA
PAPGQALPAK ISLSADTLFD FDKSTIKAGG TGKLDALVDR LKGVNVDVVI AVGHTDSVGT
DAYNQRLSLA RADSVKAYLV SKGVDRQRIR TEGRGESQPV ADNATAEGRA KNRRVDIEVV
EARPAAK
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