| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0229 |
|---|
| Symbol | |
|---|
| ID | 4012370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 250832 |
|---|
| End bp | 252574 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637939913 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_547092 |
|---|
| Protein GI | 91786140 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGACG AGAACCAGGT TTTTGACTAC ATCATCATTG GCGCCGGCAC GGCCGGTTGT
CTGCTGGCCA ACCGCCTCAG CGCTGACGCT TCCAAGCGCG TGCTGCTGAT CGAGGCCGGC
CGCAAGGACG ACTACCACTG GATCCACATT CCGGTGGGCT ATCTGCACTG CATTGGCAAC
CCGCGCACCG ACTGGCTGTA CAACACCGAG CCGGACGCCG GCCTCAACGG CCGCGCACTG
CGCTACCCGC GGGGCAAAAC GCTGGGCGGC TGCTCGAGCA TCAACGGCAT GATTTACATG
CGCGGCCAGG CCCGCGACTA CGACCGGTGG GCGGAACTGA CCGGCGACAG CGCCTGGCGC
TGGGACAACG CCCTGCCTCA TTTCAAGCTG CACGAAGACT ACTACAAGGG CGCGGACGCC
ATGCACGGCG CACGCGGCAC CGCCCCCGAG CTGATGCAGG ACAAGCTCAA CCCCTACCAG
AAGCTGCTGC GCCACCGCAA CGCGGGCGGC GAATGGCGCA TTGAAAAACA GCGGCTGCGC
TGGGACATTC TGGATGCGTT TGCCGAGGCT GCTACCCAAG CCGGCATTCC GGCCACCCCG
GACTTCAACC GGGGCGACAA CGAAGGCGTC GGGTATTTTG AAGTCAACCA GAAAAGCGGC
TGGCGCTGGA ATACCGCCAA GGCCTTCCTG CGGCCGGCCT GCTACGGCCG GCCCAATTTT
GAGCTCTGGA CCAATGCGCA GGTGTGCAAG CTGCTGATCG AGCCGCAGCC CGATGGCAGC
CAGCGCTGTA CCGGCGCCGA GGTATGGACC GGCCAGGGAC GCATCACCGC GCTGGCCACC
CGGGACTCGG AACACATGGG CGAGGTCATT CTCTGCGCCG GCAGCATCGG CTCGCCGCAA
ATTCTGCAGC TCTCGGGCAT TGGCCCGGCC GCCCTGCTGC AGCAGCACGG CATCCCCGTG
GTGCAGGATC TGCCCGGTGT CGGCGCCAAC CTGCAGGACC ACCTGCAAAT TCGCTCGGTC
TACAAGGTGC AGGCCCTGGA AGGCGGCAAG CGCTGGGGCC TGTCGCTCAA CACCATGGCC
AATTCGCTGT GGGGCAAGGC CCGCATCGGG CTCGAATATG CGTTTCGCCA GACCGGCCCG
ATGAGCATGG CGCCCTCGCA ACTGGGCGCC TTCACGCGCA GCTCGCCGGC GCAACCCTAC
CCGAACATCG AGTACCACGT CCAGCCGCTG TCGCTCGATG CCTTTGGCGA GCCGCTGCAC
AATTTCAATG CCTTCACGGC GAGCGTGTGC AACCTCAACC CGACCAGCCG CGGCACCGTG
CACATCAAGA GCGGCCATTT TGAGGACGCC CCGGCCATCG CCCCCAATTA CCTAAGCACG
GCCGAGGACC GCCAGGTGGC GGCCGACTCG CTGCGCGTGA CGCGCCGCAT TGTCAGCCAG
AGCGCGCTGG CCAAATACCG GCCTGAAGAA TTCAAGCCGG GCGTGCAGTT CCAGACCGAC
GAAGAACTCA CGCGGCTGGC CGGCGACATT GCCACCACCA TCTTCCACCC GGTCGGCACC
ACCAAAATGG GCCGCCATGA CGACCCCCTC GCGGTGGTGG ACTCGCACCT GCGGGTGCGC
GGCGTTCGCG GCCTGCGCGT CGTCGATGCC GGGGTGATGC CGCTGATCAC CAGCGGAAAT
ACCAACTCGC CCACGCTGAT GATCGCGGAG AAGGCGGCGC AGTGGATTCG CGACGGCGAG
TAA
|
|---|
| Protein sequence | MQDENQVFDY IIIGAGTAGC LLANRLSADA SKRVLLIEAG RKDDYHWIHI PVGYLHCIGN
PRTDWLYNTE PDAGLNGRAL RYPRGKTLGG CSSINGMIYM RGQARDYDRW AELTGDSAWR
WDNALPHFKL HEDYYKGADA MHGARGTAPE LMQDKLNPYQ KLLRHRNAGG EWRIEKQRLR
WDILDAFAEA ATQAGIPATP DFNRGDNEGV GYFEVNQKSG WRWNTAKAFL RPACYGRPNF
ELWTNAQVCK LLIEPQPDGS QRCTGAEVWT GQGRITALAT RDSEHMGEVI LCAGSIGSPQ
ILQLSGIGPA ALLQQHGIPV VQDLPGVGAN LQDHLQIRSV YKVQALEGGK RWGLSLNTMA
NSLWGKARIG LEYAFRQTGP MSMAPSQLGA FTRSSPAQPY PNIEYHVQPL SLDAFGEPLH
NFNAFTASVC NLNPTSRGTV HIKSGHFEDA PAIAPNYLST AEDRQVAADS LRVTRRIVSQ
SALAKYRPEE FKPGVQFQTD EELTRLAGDI ATTIFHPVGT TKMGRHDDPL AVVDSHLRVR
GVRGLRVVDA GVMPLITSGN TNSPTLMIAE KAAQWIRDGE
|
|---|
| |