| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_0090 |
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| Symbol | |
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| ID | 4012251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 93350 |
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| End bp | 94690 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637939776 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_546955 |
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| Protein GI | 91786003 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCATCA CACTATTGAC TTCGATGGTG CTCGCGTTTG CGCTGAGCAT TTCCATTTCC
GTGGCCATAG GCGGCTCGGC CATGCTGGGC CTGGCGCTGT TCGACATGGA CAAGCTGGTG
CTCGCGCCCA AGGAGATGTT TGCCGCGATC GACAAGTTTC CGCTCGCGGC CGTGCCGTTC
TTCATCCTGG CGGGCAACCT GATGGAGACC GGCGGCATCT CGCGGCGGCT GGTCGAATTC
GCCAAGTCGC TGGTCGGTGG CGTGCAGGGC GGCCTGCCGA TGACCTGCGT GCTCACCTGC
ATGATCTTTG CCGCGGTGTC GGGCTCCTCG GTGGCCACCA CCTTCGCCAT CGGCTCCATC
CTGATTCCCG CGCTGATCAA GCACGGCTAC CCGACCAGCT ACGCCGCCGC GCTGCAGGCG
ACCTCGGCCG AGCTCGGCGT GATCATTCCG CCGTCCATCC CGATGATCCT GTTCGGCGTG
TCGGCCGAGG TGTCCATCGG CGAACTGTTT ATCGCCGGCT TCGGCCCGGG CCTGCTGATC
GGCGGCGCGC TGATGCTGTT TGTGCACCTG TATTGCCGCT TCAAGGGCTG GGGCAAGCGC
GATGGCGACG GCCGGCTGCC GGTGCGCATC GCCACGGCCA AGGCCGGCTG GGCGCTGCTG
ATGCCGGTGA TCATCCTGGG GGGCATCTAC GGCGGCATTT TCACGCCCAC CGAGGCGTCG
GTGGTGGCGG TGTTCTATGC GCTGACGGTG GGGCTGTTCA TTCACCGCGA ACTGGAGCTC
AAGGACCTGG TTCCGGTCTT TCGCAAGTCG CTGATCTCCA GCGCGGTGAT CATGTTCATC
ATCGCCAACG CCGGGCTGTT CGCCTTCCTG ATCACGCGCG CCGGTGTGCC GGAAGCGCTG
GGCACCTGGC TGACCGAGGT GTTGAAGTCG CCCACGTGGT TTCTGCTGGG CGTGAACGCG
GCGCTGTTCG TCATCGGCAT GTTCATTGAG ACCTCCGCCG CCATCATCGT GCTGGCGCCT
ATCCTGGTGC CTGTGGCGCG TCACTTCGGC GTCGACCCGG TGCACTTCGG CACCATCATG
GTGGTCAACC TCGCGCTGGG AATGATCACG CCGCCGTTTG GCGTGAACCT GTTCGCCGCC
TGCACGGTGG CCAGGATTTC ACTCGACCAG ATCGTCAGGC ACCTGGTGCC CTTCGTGCTC
GTGATCGTCG GTTGCCTGAT GGTCGTCACC TATGTGCCCA GCATCAGCCT GGCGCTGCGC
GACCTGGTCT ATCCGCCGAA GGTCGCCAGC GTGGCCCCAT CGCCTTCTCC ATGGGTCGCG
CCGGCCCCCG CGTCGAATTG A
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| Protein sequence | MPITLLTSMV LAFALSISIS VAIGGSAMLG LALFDMDKLV LAPKEMFAAI DKFPLAAVPF
FILAGNLMET GGISRRLVEF AKSLVGGVQG GLPMTCVLTC MIFAAVSGSS VATTFAIGSI
LIPALIKHGY PTSYAAALQA TSAELGVIIP PSIPMILFGV SAEVSIGELF IAGFGPGLLI
GGALMLFVHL YCRFKGWGKR DGDGRLPVRI ATAKAGWALL MPVIILGGIY GGIFTPTEAS
VVAVFYALTV GLFIHRELEL KDLVPVFRKS LISSAVIMFI IANAGLFAFL ITRAGVPEAL
GTWLTEVLKS PTWFLLGVNA ALFVIGMFIE TSAAIIVLAP ILVPVARHFG VDPVHFGTIM
VVNLALGMIT PPFGVNLFAA CTVARISLDQ IVRHLVPFVL VIVGCLMVVT YVPSISLALR
DLVYPPKVAS VAPSPSPWVA PAPASN
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