| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4891 |
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| Symbol | |
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| ID | 3973713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5460084 |
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| End bp | 5461700 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637928003 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_534732 |
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| Protein GI | 90426362 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAGTG CCGCGATCAC GTGCTGGTGG GCGGTGGGGG TGCTGTACCA GATCTATCCG
CGCTCGTTTC AGGACGCCGA CGGCGACGGC ATCGGCGATC TCGCCGGTAT CATCGCCCGG
CTGCCCTATC TGGTCGATCT CGGCGTCGAT GCGATTTGGC TGTCGCCGAT TTTTCCGTCT
CCGATGGCGG ACTTCGGTTA CGACATCGCC GACTATGTCG GCATCGATCC GCTGTTCGGC
ACCATGGATG ACTTCGACGC GCTGGTCGCT GCCGCGCACG GAAACGGGCT GAAAGTCATT
CTTGACCTGG TGCCGAACCA CACCTCGGAT CGGCATCCGT GGTTCGTCGA AAGCCGCGCC
TCGCGCGACA ATCCGAAACG CGATTGGTAT CTGTGGCGCG ATCCGGCGCC GGACGGCGGG
CCGCCGAACA ATTGGCTGTC GGAATTCGGC GGCTCCGGCT GGCAGTATGA TGAGACGACG
CGGCAATATT ACTATCACGC CTTCCTGGCG CAGCAGCCGG ATCTGAACTG GCGCAACCCG
AAGGTGCGCG AGGCGATCTA TCAGGTGATG CGGTTCTGGC TCGGCCGGGG CGTCGACGGC
TTTCGCGTCG ACGTGATCTG GCATTTGATC AAGGACGAAC TGTTCCGCGA TAATCCGCCG
AACCCCGACT TCAAGCCGGA GATGCCGCCG CACGCTGCCC TGCACCCGGT GTATTCCGCC
GACCGGCCGG AGACGCTGCA GGTGGTGGCC GAGATGCGCC GGGTGATCGA CGAGTTCGAC
GCCCGGGTGC TGATCGGCGA GATCTACCTG CCGATCGAGC GGCTGGTGGC GTATTACGGC
GAAGGTCTCG CCGGCGCGCA GCTGCCGTTC AATTTCGCGC TCTTATCAAC GCCATGGCAC
GCCCGCACCC TGGCGCAACT GATCGACCGC TACGAGGCCG CGCTGCCGCA AGGCGCCTGG
CCGAACTGGG TGCTCGGCAA TCACGACCGC CCCAGGATCG CCAGCCGCGT CGGTTTGGCA
CAGTCCCGCG TCGCGGCGAT GCTGTTGCTG ACGCTGCGCG GCACGCCGAC GATGTATTAT
GGCGACGAGA TCGGCATGCA GCAGGTGGCG ATCGCGCCCG AGCAGGTGCG CGATCCGTTC
GAGAAGAACG TGCCGGGCAT CGGCGTCGGC CGCGACGGCT GCCGCACGCC GATGCAATGG
GACGCTTCCG CGCATGGCGG GTTTTCGGCC GCGCAGCCGT GGCTGCCGTT GGCCGAGCAT
TACGCGCAGG AGAACGTCGC CAATCTGAGT GCCGATGCGC AATCGATCCT CAACCTCTAT
CGTGCGCTGA TCAGCTTGCG CAAACGGCTG CCGCAGCTTG CGCATGGCGA CTACGCGCCG
CTCGCCGCCG ACGGCGATCT GTTGCTGTAT CGGCGCCACG ACGCGACAGG CTCGGTGCTG
ATCGCGCTCA ATCTCGGCGC CCAGCCGGTC TCGGTGGTGT CCGACACCAT CGGGCTCGAC
GGCGAGATCC TGCTCTCCAC CGCGATGGAC CGCGGCGGCG AACGGGTCGG CAGCGAACTC
AGCCTGCGCG GCCATGAGGG CGTCATCGTC GGGCCGGCGC CTGAGGAGGT GGTGTAG
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| Protein sequence | MPSAAITCWW AVGVLYQIYP RSFQDADGDG IGDLAGIIAR LPYLVDLGVD AIWLSPIFPS
PMADFGYDIA DYVGIDPLFG TMDDFDALVA AAHGNGLKVI LDLVPNHTSD RHPWFVESRA
SRDNPKRDWY LWRDPAPDGG PPNNWLSEFG GSGWQYDETT RQYYYHAFLA QQPDLNWRNP
KVREAIYQVM RFWLGRGVDG FRVDVIWHLI KDELFRDNPP NPDFKPEMPP HAALHPVYSA
DRPETLQVVA EMRRVIDEFD ARVLIGEIYL PIERLVAYYG EGLAGAQLPF NFALLSTPWH
ARTLAQLIDR YEAALPQGAW PNWVLGNHDR PRIASRVGLA QSRVAAMLLL TLRGTPTMYY
GDEIGMQQVA IAPEQVRDPF EKNVPGIGVG RDGCRTPMQW DASAHGGFSA AQPWLPLAEH
YAQENVANLS ADAQSILNLY RALISLRKRL PQLAHGDYAP LAADGDLLLY RRHDATGSVL
IALNLGAQPV SVVSDTIGLD GEILLSTAMD RGGERVGSEL SLRGHEGVIV GPAPEEVV
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