| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4889 |
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| Symbol | |
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| ID | 3973711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5456890 |
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| End bp | 5459052 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637928001 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_534730 |
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| Protein GI | 90426360 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTCAT CGGACACGGC ATTTCTGCGC GGCGGTGGCG AGACCGGTGC GCTGATTGCG
GGCTTCGATT GGCAATCGAC GTCGCTCGGC GCGATCACGG ACTGGCCGCA ATCGCTGAAG
ACGGCCGCCG GTCTGGTAGT GCACTCGACG GTGCCGATGG TGATGCTGTG GGGCCCCGAC
GGCTTCATGA TCTACAACGA CGCCTATTCG GCCTTCGCTG GCGCCCGGCA TCCGGCGCTG
CTCGGCAGCA AGGTCCGCGA GGGCTGGCCC GAGGTCGCCG ATTTCAACGA CAATGTCATG
CGGATCGGTC TCAGCGGCCG CAGCTTGGCC TATCGCGACC AGAAGCTGAC GCTGTACCGC
AACGGCGTTC CCGAACCGGT CTGGATGAAC CTCGACTATT CGCCGGTGCT GGATGAGAGC
GGTCGCCCCG CCGGCGTGAT CGCCATCGTG GTGGAAACCA CCAAGCGGGT GCTGGCCGAT
CAACGCGTCG CCGCCGAGCA GGACCGGCTG CTCAGCATGT TCGAACAGGC GCCCGGCTTC
ATGGCGATGG TCGAGGGCCC GGAGCACGTC TTCACCCTCG CCAACCAGGC CTATCTGCAG
CTGATCGGAC ATCGCGACGT GATCGGCCGG CCGTTGCGCG AGGCGCTGCC CGAGGTCGAG
GGCCAGGGCT TTTCCGAGAT CATGGACGAC TGTTATCGCA CCGGCCAGCC GTTCGTCGGC
ACCGCCTGGA AGGTCAGCCT GCAGCGCGTG GCGGGCGGCG CCGTCGAGGA CCGCTTCGTC
GATTTCGTCT ACCAGCCGGT GCGCGACGGC GCCGGCGACG TTACCGGCAT TTTCGTGCAG
GGCTCCGACG TCACCCAGCG GGTCGCCGGC GATGCCGAAT TGCGCCGCAT CACCGAGACG
CTGGAAGCCC GCGTCGGCGA GCGCACCGCC GAACTCGCCG CGGCGAACCG GCAATTGGTC
GCCCAGATCG AGGAGCGCGA ACGGGTCGAG GCGACGCTGC GGCAGATGCA GCGGCTGGAG
GCGGTCGGCC AGCTCACCTC CGGCGTGGCG CACGACTTCA ACAATCTGTT GACGGTGGTG
CTCGGCAATC TCGGCTTCCT CGAAAAGACC CTCGATCGCG CCGGCGTCGA CGCCAAGGCG
CACGCAAGGC TCGCCAATAT CCGCACCGCC GCCGAGCGCG GCGCGACGCT GACCGCGCAG
CTTTTGGCGT TCTCGCGCCG GCAGCGGCTG GAAACCCGCG CCGTCGATCT CAATGAGACC
GTGACGAAGA TGCGAGCGCT CTTGCAGAGT TCGATGGGCG GATCGGTGCG GCTGGAAACC
GTGTTGCAGC CGGATCTGTG GCAGGCGCTG GTCGACCCGA CCCAGATCGA ACTGGTGATC
CTCAATCTGG CGATCAACGC CCGCGACGCC ATGCAGGTCG GCGGCTCGCT GACGGTGGAG
ACCGCCAACG TCCGGCTCGG CGCGCCGACC CGGCCGGAAA TGCCGGCCGC CGGCGAATAT
GTGATGATCG CGGTGGCCGA CACCGGCACC GGAATGACGC CCGAGGTGCT GGCCAAGGCG
TTCGAGCCGT TCTTCACCAC CAAGCCGGTC GGCAAGGGCT CCGGGCTCGG GCTCGCCCAG
GTGTTCGGCT TTGCCAAGCA GTCCGGCGGC GGGGTGCGGA TCGACACCCG GATCGACGAA
GGCACCACGG TGAAAGTGTT TCTGCCGCGC GCCGCGCGCA GCGCCGCCGC GCAGCCGTCA
GATCTGCGCG AGGCGATGCC GCTGCGCGGC CCGGTGCGAC GGCTGTTGTT GGTCGACGAC
GACAGCGCGG TGCGCGACGT CACCGCGGCG ATGCTGCGCG AGATCGGCTG CGTGGTGATC
GAGGCCGGCA GCGGCGGCGC CGCGCTGGAT ATTCTGGAGC GCGACCCTGC GCCGTTCGAT
CTGATGGTGA TCGATTTCGC GATGCCCGGC ATGACCGGCG CCGAGGTGGC GCGCGAGGCG
CAGTTGCGGC GGCCAGGCAT GCCGATGATC TTCATCACCG GCTACGCCGA TCTGGCGGCG
CTGCAGAACA TCGGCGAAGA CGCCATCGTG CAGAAGCCGT TCCGCGACGA CGAATTGCTG
CGCAAGATCG GCCGCGCGCT CGGCGGCGGC GCCACGGGCA ACGTGGTGCA AATGCGCAAG
TAG
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| Protein sequence | MASSDTAFLR GGGETGALIA GFDWQSTSLG AITDWPQSLK TAAGLVVHST VPMVMLWGPD
GFMIYNDAYS AFAGARHPAL LGSKVREGWP EVADFNDNVM RIGLSGRSLA YRDQKLTLYR
NGVPEPVWMN LDYSPVLDES GRPAGVIAIV VETTKRVLAD QRVAAEQDRL LSMFEQAPGF
MAMVEGPEHV FTLANQAYLQ LIGHRDVIGR PLREALPEVE GQGFSEIMDD CYRTGQPFVG
TAWKVSLQRV AGGAVEDRFV DFVYQPVRDG AGDVTGIFVQ GSDVTQRVAG DAELRRITET
LEARVGERTA ELAAANRQLV AQIEERERVE ATLRQMQRLE AVGQLTSGVA HDFNNLLTVV
LGNLGFLEKT LDRAGVDAKA HARLANIRTA AERGATLTAQ LLAFSRRQRL ETRAVDLNET
VTKMRALLQS SMGGSVRLET VLQPDLWQAL VDPTQIELVI LNLAINARDA MQVGGSLTVE
TANVRLGAPT RPEMPAAGEY VMIAVADTGT GMTPEVLAKA FEPFFTTKPV GKGSGLGLAQ
VFGFAKQSGG GVRIDTRIDE GTTVKVFLPR AARSAAAQPS DLREAMPLRG PVRRLLLVDD
DSAVRDVTAA MLREIGCVVI EAGSGGAALD ILERDPAPFD LMVIDFAMPG MTGAEVAREA
QLRRPGMPMI FITGYADLAA LQNIGEDAIV QKPFRDDELL RKIGRALGGG ATGNVVQMRK
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