Gene RPC_4823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4823 
Symbol 
ID3973527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp5381441 
End bp5384950 
Gene Length3510 bp 
Protein Length1169 aa 
Translation table11 
GC content66% 
IMG OID637927935 
Productperiplasmic sensor hybrid histidine kinase 
Protein accessionYP_534664 
Protein GI90426294 
COG category[E] Amino acid transport and metabolism
[K] Transcription
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGCACG ATTGGGGCGT GATCGCGGCC GCGTTCGGCT ATATCGGCTT TCTGTTCCTG 
GTCGCCAGCT ACGGCGATCG CCTCTCGCAG GCGCAACGCC AGCGGTTCGG CACCCTGATC
TACCCGCTGT CGCTGGCGAT CTACTGCACC TCGTGGACGT TCTTCGGCTC GGTCGGCGTC
GCCAGCCGCT TTAGCGTCGA TTTCCTGGCG ATCTATATCG GCCCGATCCT GATGGTGGCG
TTCGGCGCGC CGCTGCTGCG CCGGGTGATC GATCTCGCCA AATCTCAGAA CATCACCTCG
ATCGCCGATT TCATCGCCGC GCGCTACGGC AAGAGCCAGG CGGTGGCGGC CACCGTGGCA
ATCATCGCCA TCGTCGGCTC GGTGCCCTAT ATCGCGCTGC AGCTGAAAGC GGTGGCGTCC
TCGCTGCAGA CCATCCTGGG CGACGACCAA GTGATGTCGA GCATGCCGGT CGCCGGCGAC
ATCGCGCTGA TCGTGGCGCT GACCATGGCG CTGTTCGCGG TGCTGTTCGG CACCAGGCAG
ACTAACGCCA CCGAACATCA GCACGGCTTG ATGCTCGCGG TTGCCACCGA ATCCATCGTC
AAGCTGGTTG CTTTCATTGC CGCGGGTGCC TTCGTCACCT TCTGGATGTT CAGCCCGCAC
GAGCTGATCG AACGGGCGAT GAAGACCCCG GAGGCGGTCC GCGCCATCGA CTACGTGCCG
TCCAGCGGCA ATTTCCTCAC CATGGTGCTG CTGTCGTTCT GCGCCATCAT GCTGCTGCCG
CGGCAATTTC ACGTCAGCGT GGTGGAGAAT TCCAGTAGCG CCGAGGTCAG CCGCGCCCGC
TGGCTGTTCC CGCTGTATCT GATCGCGATC AATCTGTTCG TGATTCCGAT CGCGCTGGCC
GGATTGATCA GTTTCCCGTT CGGCGCGGTC GACAGCGACA TGTACGTGCT GGCGTTGCCG
CTGGAGGCCA ACGCGCCCTA TCTCAGCGTC GCGGTGTTCA TCGGCGGGCT GTCGGCGGCG
ACCGCGATGG TGATCGTCGA ATGCGTGGCG TTGGCGGTGA TGGTGTCCAA CGACCTGGTG
ATGCCGCTGG TGCTGAAACG CGGCGTCACC CCGCGCGACG ACGAGCGCAG CTACGGTTCG
TTCCTGCTCA CGGTCCGCCG GGTGGCGATC TTCGCCATCC TGATCATGGC CTATCTGTAT
TTCCGCGCGC TCGGCAATAC CCAGCTGGCG GCGATCGGGC TGTTGTCGTT CGCCGCCATC
GCGCAGTTCG CGCCGGCGTT TTTCGGCGGG TTGATCTGGC GCCGGGCGAC CGCGCGCGGC
GCCATCGGCG GCATGCTGAT CGGCTTCGCG GTCTGGGCCT ATACGCTGTT CATGCCGAGC
TTCCTCGACG GCAACACCGC AGGCGTGCTG TTGCTGCAGC ACGGCCCATT CGGCATCGAA
GCGCTGCGGC CGCGGGCGCT GTTCGGCGCC GATCTGCCGC CGCTGCTGCA CGGCGTGCTG
TGGAGCCTGT CGCTCAACAT CCTGGCCTAT GTGGTGCTGT CGCTGTGGAA GCAGCCGTCC
TCGATCGAAC GGCTGCAAGC CGCGGTGTTC GTGCCGGCGG CGCTGAAGCC GATGGCGCCG
GCGTTTCGGC GCTGGCGCAC GACGGTGACG GTGCAGGACA TTCTCGGCGC GGTCGCGCAA
TATCTCGGGC CGGAGCGGGC CCGCGAAGCG TTTCGAACTT TCGCCGCCAG CCGCCGGATC
AACATCGACC CGGCGGCGCC GGCGGATTTC GAATTGCTGC AGCATGCCGA GCACCTGATC
GCATCGTCGA TCGGCGCGGC GTCGTCGCGG CTGGTGCTGT CGCTGTTGTT GCGCAAGCGC
ACGGTGTCGG CGGAAGCGGC GCTGAAGCTG CTCGACGATT CCCACGCCGC GCTGCATTTC
AACCGCGAGA TCCTGCAGAC CGCGCTCAAC CACGTCCGCC AGGGCATCGC GGTGTTCAAT
CCGGATTTGC AGCTGATCTG CTCGAACCGG CAGTTCGGCG ACATCCTCGG GCTGCCGCCG
CATATCGTGC AGATCGGCAT TCCGCTCACC GAGATCCTGG AATTCCTCTC GCTCAGCGCG
CCCGGCTTCG GCGACAGCGA CATGCAGACG CAAATCCGGC TGGCCGCCTA TACCACCGAG
GGCGCGCCCT ATATCGAGCG GATGCAGGAT CGCCATCTGG TGATCGAGGT CCGCGCCAAC
CGGATGCCCG ACGGCGGCCT GGTGATCACT TTCTCCGACG TCACCCCGAG CTTCGAGGCC
GCCGAGGCGC TGGAGCGGGC CAACGCCACG CTGGAAAAGC GGGTGCGCGA CCGCACCGAG
GAACTGACAA GGCTGAATTC GGCGCTGGCC TTGGCCAAGA GCACGGCGGA AGAGGCCAAT
ATCTCCAAGA CCCGGTTCCT CGCCGCCGCC AGCCACGACA TCCTGCAGCC GCTCAATGCC
GCGCGGCTCT ATGTCACCAG CCTGGTCGAA CGCCAGAGCG GCGGCGACGA CGCCAAGCTG
GTGGAGAACA TCGACGAATC GCTGGAGGCG ATCGAGGAGA TCATCGGCGC GCTGCTGGAT
ATCTCGCGGC TCGACGCCGG TGCGATGACC CCTTCGCTGT CCAGCTTCGT GATCGGCGAT
CTGATGCGCT CGCTGGAAAT CGAATTCGCG CCGATCGCCC GGGCCAAGGG GCTGAAGCTG
ACCTTCGTGC CGTGCCTGCT GCCGGTGGAG TCCGACCGGC TGCTGTTGCG CCGGCTGATG
CAGAATCTGA TCTCCAACGC CATCAAATAC ACCCCGCAGG GCAAGGTGTT GGTGGGCTGC
CGGCGTCGCG GCCAGTCGCT GCAGATCGGC ATCTACGATA CCGGCGTCGG CATCCCGATT
CTCAAGCGCG GCGAAATCTT CAAGGAATTC CACAGGCTGG AGCAGGGCGC GCGGATCGCC
CGCGGGCTGG GCCTTGGGCT CTCGATCGTC GAGCGGCTGG CGCGGGTGCT GAACCACGGC
ATCGCGATCG ATTCCAACAA GAGCGGCGGC TCGTTCTTCT CGGTCACGGT GCAGATCGCC
AACATGGTCA ATCACACCGC CGCGGTGACC AGCGCCACGC CGCTGTCGCG GGCGTCGATG
GCCGGGATCC TGGTGGCCTG TATCGAAAAT GATCCGGCGA TCCTCGACGG CATGAAGACG
CTGCTCACCA CCTGGGGCGC AAGCGTCATC GCGGTGGCCG ATCCGGAAGC CGCCATCAAG
GCGATCGAGT CCGCCGGGCG GCCGGTCACC GGTCTTCTGG TCGATTATCA TCTCGATCGT
GGCAACGGCA TCGCCGGGAT CCGGGATATC CGCCACCGCT TCGGCGAGGA GATTCCGGCG
ATCCTGATCA CCGCCGATCG CAGCCCACGG GTCCGGGCGG CGGCGCGCGA CGATAATATC
TCGGTGCTGA ACAAGCCGGT GAAGGCGGCG TCGCTGCGCG CGCTGCTCGG GCAATGGCGC
GCGCAGCAGA ACGTTGCCGC CGCGGAATAG
 
Protein sequence
MLHDWGVIAA AFGYIGFLFL VASYGDRLSQ AQRQRFGTLI YPLSLAIYCT SWTFFGSVGV 
ASRFSVDFLA IYIGPILMVA FGAPLLRRVI DLAKSQNITS IADFIAARYG KSQAVAATVA
IIAIVGSVPY IALQLKAVAS SLQTILGDDQ VMSSMPVAGD IALIVALTMA LFAVLFGTRQ
TNATEHQHGL MLAVATESIV KLVAFIAAGA FVTFWMFSPH ELIERAMKTP EAVRAIDYVP
SSGNFLTMVL LSFCAIMLLP RQFHVSVVEN SSSAEVSRAR WLFPLYLIAI NLFVIPIALA
GLISFPFGAV DSDMYVLALP LEANAPYLSV AVFIGGLSAA TAMVIVECVA LAVMVSNDLV
MPLVLKRGVT PRDDERSYGS FLLTVRRVAI FAILIMAYLY FRALGNTQLA AIGLLSFAAI
AQFAPAFFGG LIWRRATARG AIGGMLIGFA VWAYTLFMPS FLDGNTAGVL LLQHGPFGIE
ALRPRALFGA DLPPLLHGVL WSLSLNILAY VVLSLWKQPS SIERLQAAVF VPAALKPMAP
AFRRWRTTVT VQDILGAVAQ YLGPERAREA FRTFAASRRI NIDPAAPADF ELLQHAEHLI
ASSIGAASSR LVLSLLLRKR TVSAEAALKL LDDSHAALHF NREILQTALN HVRQGIAVFN
PDLQLICSNR QFGDILGLPP HIVQIGIPLT EILEFLSLSA PGFGDSDMQT QIRLAAYTTE
GAPYIERMQD RHLVIEVRAN RMPDGGLVIT FSDVTPSFEA AEALERANAT LEKRVRDRTE
ELTRLNSALA LAKSTAEEAN ISKTRFLAAA SHDILQPLNA ARLYVTSLVE RQSGGDDAKL
VENIDESLEA IEEIIGALLD ISRLDAGAMT PSLSSFVIGD LMRSLEIEFA PIARAKGLKL
TFVPCLLPVE SDRLLLRRLM QNLISNAIKY TPQGKVLVGC RRRGQSLQIG IYDTGVGIPI
LKRGEIFKEF HRLEQGARIA RGLGLGLSIV ERLARVLNHG IAIDSNKSGG SFFSVTVQIA
NMVNHTAAVT SATPLSRASM AGILVACIEN DPAILDGMKT LLTTWGASVI AVADPEAAIK
AIESAGRPVT GLLVDYHLDR GNGIAGIRDI RHRFGEEIPA ILITADRSPR VRAAARDDNI
SVLNKPVKAA SLRALLGQWR AQQNVAAAE