| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4787 |
|---|
| Symbol | |
|---|
| ID | 3972990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 5348269 |
|---|
| End bp | 5349123 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637927899 |
|---|
| Product | cytochrome-c oxidase |
|---|
| Protein accession | YP_534628 |
|---|
| Protein GI | 90426258 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2 |
|---|
| TIGRFAM ID | [TIGR02866] cytochrome c oxidase, subunit II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.792783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGT CGAGGGGCCG GATCGGCCGG CTGGTATTCA GTCTGGTTTT CGCAGCGATT
GCAATTTCGG CCAGCGGCGT CGCATTCGCC GGATTGGGCC AACCCTCCCC TTGGGAAATC
AAGCTGCAGG ACTCCGCCAG TCCGGTGATG GACAACATCA TTTGGTTCCA CAATTTCCTG
TTGTGGCTGA TCACCGGCAT CACGCTGTTC GTGCTGGCGC TGCTGGTGAT CGTGGTGGTC
CGTTTCAACG CCAAGGCCAA TCCGATCCCG TCGCGGACCA CCCACAACAC CCTGATCGAA
GTGGCGTGGA CCATCGTCCC GGTGCTGATC CTGGTCGCGG TGGCGGTGCC GTCGTTCCGG
CTGCTGTTTC AGCAGCTCGA CATTCCGAAA GCCGACCTCA CCATCAAGGC CACCGGCAAT
CAGTGGAACT GGTCGTTCTC CTATCCCGAC GACAAGATCG ATTTCACCTC GATCATGCTG
ACCGACGAGG AGCGCGCCAA GATCACGCCG ACGCCGCCGC GGCTGCTCGC GGTCGACAAT
GAGGTGGTGG TGCCGGTCGA CAAGGTGGTG CGGGTGCAAA CCACCGCCAA CGACGTGATC
CACTCCTTCG CCATCCCCTC GTTCGGCATC AAGATCGACG CCATCCCCGG CCGGCTCAAC
GAGACCTGGT TCAAGGCCAC CAAGCAAGGC AAGTTCTACG GCCAGTGCTC CGAACTGTGC
GGCAAGGACC ACGCCTTCAT GCCGATCGTG ATCAGCGTCG TCAGCGACGA GGAATACGCC
GCCTGGAAGA AGAAACAGGT CGCCGCCACC GCCGCCAAAT CTTCGCTCGC CTCGGCAGGC
GCCGCCGCGC AATGA
|
|---|
| Protein sequence | MKMSRGRIGR LVFSLVFAAI AISASGVAFA GLGQPSPWEI KLQDSASPVM DNIIWFHNFL
LWLITGITLF VLALLVIVVV RFNAKANPIP SRTTHNTLIE VAWTIVPVLI LVAVAVPSFR
LLFQQLDIPK ADLTIKATGN QWNWSFSYPD DKIDFTSIML TDEERAKITP TPPRLLAVDN
EVVVPVDKVV RVQTTANDVI HSFAIPSFGI KIDAIPGRLN ETWFKATKQG KFYGQCSELC
GKDHAFMPIV ISVVSDEEYA AWKKKQVAAT AAKSSLASAG AAAQ
|
|---|
| |