Gene RPC_4760 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4760 
Symbol 
ID3972795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp5323703 
End bp5324902 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content67% 
IMG OID637927872 
ProductBcr/CflA subfamily drug resistance transporter 
Protein accessionYP_534601 
Protein GI90426231 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.579597 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGCT TTGCCAGGAA TGCTGTGGTG CTCGGGTTGC TGTCGGCGGT CGGACCGTTC 
GCCATCGACA TGTATCTGCC GGCGCTGCCC TCGATCGCAG CCGATCTGAA CGCCTCGACC
GCCGCCGCGC AATTGTCGCT GACGGTGTAC TTCCTGGCGT TCGGCGTGTT CCAGATCTTA
TACGGTCCAA TCTCCGACAT GGTCGGCCGC AAGCCGCCGC TCTATCTCGG GCTTTCGCTG
TTCGCACTGG GCGCGATCGG CGGCGCGCTG GCGCCCTCGA TCGGCTGGTT GATCGCCGCA
AGAGTGCTGC AGGGCGTCGG CGCCGCGGCG GTCACGGTGA TCCCCCGCGC CATCATCCGC
GACCTGCATA CCGGTGCGGA GGCCACCCGG TTGATGGCGA TGGTGATGCT GGTGTTCGGC
GTCTCGCCGC TATTGGCTCC GCTGTTCGGC AGCGCGTTGA TCGGCTTGGT CGGCTGGCGC
GCGGTGTTCG TGGCGATGAC GATCGCCGCG CTGCTCGGTC TGCTGCTGGT CGGGCTGTTG
CTGCCGGAGA CCCGGCCGAT CGCGCATCGC AGCAAGGGCG GGGTCGGACC GGTGATGGGC
AACTTCGCGG TGCTGTTGCG CGACCGACAG TTCGTGGGGC TGGTGTTGAT CGGCGGGTTC
GGCATGGCGA GCTTCTTCAG CTTCCTGGCC GGCTCGTCGT TCATCTATAT CGGCCATTTC
GACCTGACGC CGACGCAATA CAGCCTGGCT TTCGCGCTGA ACGCGATCGG CTTCATCGGC
GCCTCGCAAT TCGCCGCGCC GCTCGGCGCG CGGCTTGGCA TGCGCCGCGT GGTGATCATC
GCGGTGTCGC TCTACGCCGG CTTCGCGCTG CTGCTGCTGG CGCTGACCTT GTCCGGGGTC
GATCAGTTCG CGGTGTTGAT GGCGATGTTG TTCGTGATCT TCGGCTGCCT CGGCGTGGCG
TTGCCGCAGA CCATGGTGCT GTCGCTGGAA AGCCACGGTC CGATCGCCGG CGCCGCTTCC
GCGCTGTCGG CGACGCTGCA GATGCTGATC GGCGCCGCGT TGATCGCGTT GATCAGCCTG
TTCGAAAACG GCACCGCGCT GCCGATGGTG GCAGGAATCG CGGTCGCCGC CTGCACGGCG
CTCGGCGTCA CGCTGGCCAC GCTGCGCCGG CGTGAGCCGC TGCCGCAGCC GGCGGAGTAA
 
Protein sequence
MSSFARNAVV LGLLSAVGPF AIDMYLPALP SIAADLNAST AAAQLSLTVY FLAFGVFQIL 
YGPISDMVGR KPPLYLGLSL FALGAIGGAL APSIGWLIAA RVLQGVGAAA VTVIPRAIIR
DLHTGAEATR LMAMVMLVFG VSPLLAPLFG SALIGLVGWR AVFVAMTIAA LLGLLLVGLL
LPETRPIAHR SKGGVGPVMG NFAVLLRDRQ FVGLVLIGGF GMASFFSFLA GSSFIYIGHF
DLTPTQYSLA FALNAIGFIG ASQFAAPLGA RLGMRRVVII AVSLYAGFAL LLLALTLSGV
DQFAVLMAML FVIFGCLGVA LPQTMVLSLE SHGPIAGAAS ALSATLQMLI GAALIALISL
FENGTALPMV AGIAVAACTA LGVTLATLRR REPLPQPAE