| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4750 |
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| Symbol | |
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| ID | 3972726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5314365 |
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| End bp | 5316701 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637927862 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_534591 |
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| Protein GI | 90426221 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTTG CCCCATCTAG CCGGGACATC GATCAGCAAA TGTCCCCGTC GATCTACGCC
GGGATGGTGG ATTCGCTCTT CATGAATCCG CTGCCGATGA TCTTTGGCGC GTTCGGCCCT
GCAATCGCCG GGGCGGTGAT CGGAGCGGTC ACCGGCGACA TTCCGATCTG GCTCTGCGTG
CCGCTGTTCG TCGCGGTGGG CATCGCCCGC GCATTTCAGA TGTACCGCTA CAAGCAACGT
AACGCGCCGC TGTCAGCCGC CGAGGCGGTG AACTGGGAGC AACGCTACCG GGTCGGCGCG
ATCGTTTACG GCATCGCCTT GGGGATTTGG AGCGCCACGG TATTGTTGCG GACCAGCGAC
GCCGCCGCGC ACATGCTCTG CGTCACCACG GTGGTGGCCT ACACCTCGGC CGGCGTCGGC
CGAACGTTTG GACGGCCGCG GATCTTTCAT TTGCAGGTGC TGCTCGGCTG CGGGCCGCTG
ATCTTGGCGC TGATGTTCGT CGGCGGCGCC TATCATTTCG CGCTGGCGCT GCTCAGCATC
GTGTTCTTCG TCGCGATCCG GCATCTCACC TCGAGCCTGC AGCGGATCTA CCTGAACGCC
TGGATTGCCC GCGAGCGCGA GGCCGCGATC GCCACCCAGT TCGACACCGC GCTCAACAAC
ATGCCGCACG GCCTGTGCAT GTTCAGCGGC AGCGATAGCC GACTCGCGGT GATGAACCAG
CGGTTCGCCG ACATGATGCG GTTGCCGCAC GATTTCATGC ACCGCAGCGG CAGCGCCTCG
GACATTCTCG CCGCTTGCGT CGCCGCCGGG ACGATTTCGC CGTCGAGCGG CCGAATGATC
GTGTCGGAAA TCGAAAACGC CATCGCCGGC GAGATCATCA CGGTGGATTC CGAAACCACC
GACGCCCACG CCTTCTGCTG GACGTTCCAG CCGATGATCG ACGGCGGCAC CGTCGTGCTG
GTCGAGGACA TCACCGAGCG GCGCAGCGCC GAGGCGCGAA TCATCCATCT CGCCCGCTAC
GACGAACTGA CCGGGCTGCC CAATCGGGTG AACTTCCGCG ACGAGATCGA ACGGCTGCTG
ATGGCCGTGC ACGGCCACGC CGAGACGCGG CCCTCGGCGC TGTTGTTCAT CGATCTCGAC
CAGTTCAAGC AGGTCAACGA CACGCTCGGT CATCCCTGCG GCGACCAGTT GTTGTGCGAC
GTGGCCGACC GGCTGCGCGA GATGCTGCGG CCGGAAGATT TCGTGGCGCG GTTCGGCGGC
GACGAATTCG TCGTGTTCCA GCAACACATC GCGTCCAAGG AAGATTCCGC CTTGCTGGCC
CGGCGGATCG TCGACCGGCT GAGCGAGCGT TATCTGATCG ATCACCACGT GGTCGAAATC
GGCGCTTCGA TCGGCATCGC GGTGACCGCG CCCGGCGTCA AGGCCGACGT GCTGTTGAAG
AATGCCGACA TGGCGCTGTA TCGCGCCAAG GCCGATGGCC GCGGCACGTT CTGTTTCTTC
CGCGAGGAGA TGGCGCACAC CGTGGAGTCG CGGCGGATCA TGGAACTCGA CCTACGCCGC
GCGCTGGCGA ACGAAGAGTT CGAGATCTAC TATCAGCCGC TGGTCAACCT GAAGACCGGC
CGGATTTCCA CCTGCGAAGC CTTGCTGCGC TGGAATCATC CGGTGCGCGG CACGGTGTCG
CCGGTCGATA TCATTCCGGT GGCCGAGGAG ATGGGGCTGA TCGTCGATCT CGGCCGCTGG
ATTCTGCGCA AGGCCTGCAT GGAATGCATG CGATGGCCGG ACGCCGTCAG CATCGCGGTG
AACTTCTCCT CGCAGCAGTT CCATCAGCGC GACGTGATGA ACGAGGTGCG CTACGCGCTC
GAGGTCTCAG GCTTGCCGGC GAACCGGCTG GAAATCGAGA TCACCGAATC CTCGCTGTTG
CGCAACACCC AGTGGACGCT CGACGCGCTG TCGCAATTGC ACGCCGCCGG GGTGCGGATC
GCGCTCGACG ATTTCGGCAC CGGCTATTCC AGCCTGAGCT ATCTGCACAA TTTCCCGCTG
CAGAAGGTCA AGATCGACCG TTCGTTCCTC GAAGGCATCG ACGCCGATCG GCCGCTGACC
TTGCTGCGCG GCGTGGCGCG GCTGTCCGCC GATCTCGGCA TGTCGGTGGT GGTCGAGGGC
ATCGAAACCA ACGAGCAGCT GGAATTGATC AGCGCCGACG GCACCGTGAC CGAGGCGCAA
GGCTATCTGT TCAGCCGTCC GGTGCCGGCC GCCCAGGTCC GGCAGCTGTT GGCCGCCTCG
CACGGCAGCC AGAGCGACAC CCACGTCCAG GCGCGGGCCG CGCGCTCGAT CGCCTGA
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| Protein sequence | MQLAPSSRDI DQQMSPSIYA GMVDSLFMNP LPMIFGAFGP AIAGAVIGAV TGDIPIWLCV
PLFVAVGIAR AFQMYRYKQR NAPLSAAEAV NWEQRYRVGA IVYGIALGIW SATVLLRTSD
AAAHMLCVTT VVAYTSAGVG RTFGRPRIFH LQVLLGCGPL ILALMFVGGA YHFALALLSI
VFFVAIRHLT SSLQRIYLNA WIAREREAAI ATQFDTALNN MPHGLCMFSG SDSRLAVMNQ
RFADMMRLPH DFMHRSGSAS DILAACVAAG TISPSSGRMI VSEIENAIAG EIITVDSETT
DAHAFCWTFQ PMIDGGTVVL VEDITERRSA EARIIHLARY DELTGLPNRV NFRDEIERLL
MAVHGHAETR PSALLFIDLD QFKQVNDTLG HPCGDQLLCD VADRLREMLR PEDFVARFGG
DEFVVFQQHI ASKEDSALLA RRIVDRLSER YLIDHHVVEI GASIGIAVTA PGVKADVLLK
NADMALYRAK ADGRGTFCFF REEMAHTVES RRIMELDLRR ALANEEFEIY YQPLVNLKTG
RISTCEALLR WNHPVRGTVS PVDIIPVAEE MGLIVDLGRW ILRKACMECM RWPDAVSIAV
NFSSQQFHQR DVMNEVRYAL EVSGLPANRL EIEITESSLL RNTQWTLDAL SQLHAAGVRI
ALDDFGTGYS SLSYLHNFPL QKVKIDRSFL EGIDADRPLT LLRGVARLSA DLGMSVVVEG
IETNEQLELI SADGTVTEAQ GYLFSRPVPA AQVRQLLAAS HGSQSDTHVQ ARAARSIA
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