| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4715 |
|---|
| Symbol | |
|---|
| ID | 3972691 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 5275837 |
|---|
| End bp | 5277123 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637927827 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_534556 |
|---|
| Protein GI | 90426186 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGACG CGGGGAACGG CACGTTCCGC TCATTGCGGG GCTTCAACTA CCGGGTCTGG
GCCGGCGGCG CGATCGTCTC CAACGTCGGC ACCTGGATGC AGCGCACCGC GCAGGACTGG
CTGGTGCTGA CCGAGCTCAC GCCCAACAAC GCCACCGCGG TCGGCATCGT GATGGCGCTG
CAATTCGGCC CGTTGCTGTT GTTGCTGCCG CTGAGCGGCT ATGCCTCCGA CCATTTCGAC
CGCCGCAAGC TGTTGCTCGC CACCCAGGCG GCGATGGGGC TGCTGGCGCT CGGACTCGGC
CTCTTGACCA TCAGCGGGCA GGTGCAGCTC TGGCAGGTCT ATGTGTTCGC TTTCCTGCAG
GGCTGCGTCA CCGCGTTCGA TTCCACCGCG CGGCAGACCT TCGTCTCCGA ACTGGTCGGC
GAGGCCGATC TGTCCAACGC GGTGGCGTTG AATTCCACCT CGTTCAACGC CGCACGGCTG
ATCGGCCCGG CGCTCGCCGG CCTGCTGATC GCCGGCGTCG GCACCGGCTT TGTGTTCCTG
ATCAACGCCG CCTCGTTCGT CGCCGTGCTC GGCTCGCTCA GCCTGCTGCG CCGCGACCAA
TTGCATCGCA GCGCCAAGGC CGGGCGCGGC CGTGGCGGCT TCATCGACGG CTTTCGCTAC
GTCTGGCGCC GCGCCGATCT CAAGGTCGTG CTGGTGATGT TTTTTCTGAT CGGCACCTTC
GGCGCCAATT TCGCGATCTT CATTTCCACC ATGTCGGTGA CGGTGTTTCA CGCCGGCGCC
AGCCAGTTCG GGCTGTTGAG TTCGATGATG GCGATCGGCT CGGTCGGCGG CGCGCTGCTG
GCGACGCGGC GCGACAAGCC CGGCATCGGT CTATTGCTGA CCGGCGCCGC AATGTTCGGC
TTGGGCCTGG CGCTGGCGGC GGTGATGCCG GAATTCTGGC TGTTCGGCGT GGCGCTGATC
GTGGTCGGCA TGGCGGCGCA GACCTTCACC ACCACCGCCA ACAGCACCGT GCAATTGTCG
ACCGAGCCTG CGATGCGCGG CCGGGTGGTG GCGATCCTGC TGGCGCTGGC GCTCGGCGGC
ACCCCGATCG GCGCGCCGAT CGTCGGCTGG GTCGCGGATA GTTTCGGCCC GCGCTGGGCG
CTCGGCGTCG GCGCCGCCGC GGGCTTTGCC GCAGCCCTTG TGGCGCTGGT TTACCTGGTC
ACGCACCGCA AGCTGCGGCT GCGCCGCGAG CCCGGCGGCT GGCGTATCCG CTTCGACGCC
GCAGAGCCGC TCAACGATTG CGGTTGA
|
|---|
| Protein sequence | MSDAGNGTFR SLRGFNYRVW AGGAIVSNVG TWMQRTAQDW LVLTELTPNN ATAVGIVMAL
QFGPLLLLLP LSGYASDHFD RRKLLLATQA AMGLLALGLG LLTISGQVQL WQVYVFAFLQ
GCVTAFDSTA RQTFVSELVG EADLSNAVAL NSTSFNAARL IGPALAGLLI AGVGTGFVFL
INAASFVAVL GSLSLLRRDQ LHRSAKAGRG RGGFIDGFRY VWRRADLKVV LVMFFLIGTF
GANFAIFIST MSVTVFHAGA SQFGLLSSMM AIGSVGGALL ATRRDKPGIG LLLTGAAMFG
LGLALAAVMP EFWLFGVALI VVGMAAQTFT TTANSTVQLS TEPAMRGRVV AILLALALGG
TPIGAPIVGW VADSFGPRWA LGVGAAAGFA AALVALVYLV THRKLRLRRE PGGWRIRFDA
AEPLNDCG
|
|---|
| |