| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4696 |
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| Symbol | |
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| ID | 3972614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 5259267 |
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| End bp | 5261078 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637927808 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_534537 |
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| Protein GI | 90426167 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTTGT CCGCTCCCAC CGACGTCGCA GACGAAGTGG CTCGTCGCCA GGCGTGGTAC
GGCGGCGATG CCGCGCCCGG CGCTGAACTG GCGGCGCTGC GGGACATCAT GCAGGCCCTA
CCCGCCGCCG TCACGCTGCA GGATGCGCAA GGCCGCTTCC TGCTGGCGAA CGACGCCGCC
GCGGCGCAAT TCGGCCTCTC CGCCGCACAA TTGCGCGCGT GGTCGCCATC CGCCGCGCTG
CCGACCGACG CGCTCGAGCA GCGCCGCAGC CTGGCGATCG ACCTGCTGAA CAGCGGCGAA
AGCCTAGTAT GCGAAGAGAA CATCGGCGAC GGCTACGGCT TGCGGATTTT CCGCACCGCG
CATCGGCGGC TCGACATCGC CGGCGCCGGC CTGCTGCTGT CGAGCTCGGT CGACATCACC
GACCAGAAGC AGGTCGAGCA GGCGCTGTTC CAGCGGGCTT ATTTCGACGA GCTCACCGGC
CTGCCGATCC GCGGCGTGAT CGAGACCCGC GCCAACGCGC TGCTGCAGAA CGATCCCGAC
GCGGGCTTCG CGCTGGCGTT CCTCGACATC GACAATTTCA AGCACATCAA CGACTATTAC
GGCCACGCCG TCGGCGACGC GCTGTTGATC GGGGTCGCCA AGCGGCTCGG GCTGCAGCTG
CGCGCCTCCG ACACGCTGTC GCGGATCAGC GGCGACGAAT TCCTGATGCT GCTCACTCCG
GTGCAGAGCC AGAGCGAAGT CATCGACGAC ATCGAATTCC TGCAGCAGCG GCTGCGTGCG
CCGTTCTACA TCGACGGCTC GGAAATCTTC GCCTCGGCCT CGATCGGCAT CAGCCTGTAT
CCCGAACACG GCCGCAGCTT CGAGACGCTG CGGCAGAACG CCGACATCGC GATGTATCAG
ATCAAGAACG CCACCAAGGG CGGCGCCGCG ATGTTCGACG TCGCGATGGA GCGCGAGGCC
TTAGCGCGGA CGAAGGTCGA GCAGGCGCTG CGGCTGGCGA TTCTCGACAA GCGGTTCTGC
TGCGCGTTCC AGCCCAAGGT CGACATCCGC AGCCGCGAGG TCAAGGGCAT CGAGGCGCTA
GTCCGGCTGC GCGACGATAA CGGCGTGATC CAGGCGCCGG GCACCTTCGT CGACCTCGCC
GTCGAACTCG GGCTGATCGA CGAACTCACC CACCTGGTGC TGTCCGAAAT CATGAAGTCG
ATCGACCTGA TCAACGACAC CTTCGGCGCC GGCGTCAGCA TCAGCATCAA CGTCGCCGCC
AAGCAGGCCG GCAATCCGAC CTTCATGCGC TCGTTCAGCG AGGCGCTGGA AGCGACCGGC
TGCCCGGAGC GCTTCATCGT CGAAGTCACC GAAGACGCCT TTGTGGCGAA ATCGCACTTC
CAGACCGAGA TCCTGCCGAT GCTGCGCCGG CTCGGCGTCG GCATCTCGAT CGACGATTTC
GGCATCGGCT ACTCCTCGCT GTCGGCGCTG GCCGATATCA CCGCCGACGA GATCAAGATC
GACCGCTCGT TCATCACCGA CATCCACAAG CGGCCGCGCA GCCAGGGTAT CCTCAAGGCG
ATCGAATCGT TGAGCGAGGC GCTCGGCATG ACGGTGATCG CCGAAGGCCT CGAAACCTTC
GAGGAACTCG CCTACCTGCA GGCGGCGACG CGGATCCGCT ACGCGCAGGG CTACTACTTC
TCGCGGCCGA TCTTCCTCGA AGAGTTGAAG GCGACGCATG CGATCAGCCG CGAGACCCGA
ACCGCGCCGC CGGCGCGGCT GCCGGAGCCG GCGCGCGCCA GCGTGATCCG AAGCAGCGGG
CAGCGCCGCT AA
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| Protein sequence | MLLSAPTDVA DEVARRQAWY GGDAAPGAEL AALRDIMQAL PAAVTLQDAQ GRFLLANDAA
AAQFGLSAAQ LRAWSPSAAL PTDALEQRRS LAIDLLNSGE SLVCEENIGD GYGLRIFRTA
HRRLDIAGAG LLLSSSVDIT DQKQVEQALF QRAYFDELTG LPIRGVIETR ANALLQNDPD
AGFALAFLDI DNFKHINDYY GHAVGDALLI GVAKRLGLQL RASDTLSRIS GDEFLMLLTP
VQSQSEVIDD IEFLQQRLRA PFYIDGSEIF ASASIGISLY PEHGRSFETL RQNADIAMYQ
IKNATKGGAA MFDVAMEREA LARTKVEQAL RLAILDKRFC CAFQPKVDIR SREVKGIEAL
VRLRDDNGVI QAPGTFVDLA VELGLIDELT HLVLSEIMKS IDLINDTFGA GVSISINVAA
KQAGNPTFMR SFSEALEATG CPERFIVEVT EDAFVAKSHF QTEILPMLRR LGVGISIDDF
GIGYSSLSAL ADITADEIKI DRSFITDIHK RPRSQGILKA IESLSEALGM TVIAEGLETF
EELAYLQAAT RIRYAQGYYF SRPIFLEELK ATHAISRETR TAPPARLPEP ARASVIRSSG
QRR
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