| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4683 |
|---|
| Symbol | |
|---|
| ID | 3972389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 5241486 |
|---|
| End bp | 5243060 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637927795 |
|---|
| Product | nitrogenase alpha chain |
|---|
| Protein accession | YP_534524 |
|---|
| Protein GI | 90426154 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2710] Nitrogenase molybdenum-iron protein, alpha and beta chains |
|---|
| TIGRFAM ID | [TIGR01284] nitrogenase alpha chain
[TIGR01861] nitrogenase iron-iron protein, alpha chain
[TIGR01862] nitrogenase component I, alpha chain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTATC ATGAGTTCGA AGTCAGCAAA TGCATCCCCG AGCGCAAGCA GCACGCGGTC
GTCAAGGGCC CGGGGGAGGA TCTGACCTCC TGCCTGCCGA AGGGATATCT CAACACCATC
CCTGGCTCGA TCTCCGAACG CGGCTGCGCC TATTGCGGCG CCAAGCACGT CATCGGCACG
CCGATGAAGG ACGTGATCCA TCTCAGTCAC GGCCCGGTCG GCTGCACCTA CGACACCTGG
CAGACCAAAC GCTATATCAG CGATAATAAC GACTATCAGC TGAAATACAC CTTCGCTTCC
GACGTGAAGG AGAAGCACAT CGTATTCGGC GCCGAGAAGC TGTTGAAGCA GAACATCCTC
GAGGCGTTCA AAGCGTTTCC GACTATGAAG CGCATGACCA TCTACCAGAC CTGCGCCACC
GCCTTGATCG GCGACGACGT CAACGCCATC GCCGCCGAGG TGATGGAGGA ACTGCCCGAC
GTCGATATCT TCGTCTGCAA CTCGCCGGGT TTCGCAGGCC CCAGCCAATC CGGCGGCCAT
CACAAGATCA ACATCGCTTG GCTGAACCAA AAGGTCGGCA CCGTCGAGCC GAAGATCACC
GGCGACTACG TCATCAATTA CGTCGGCGAG TACAACATCC AAGGTGACCA GGAAGTCATG
ATCGACTTCT TCAAGCGTAT GGGCATCCAG GTGCTGTCGA CCTTCACCGG CAACGGCTCC
TACGACGATC TGCGCAGCAT GCACGGCGCC CATCTCAACG TGCTGGAATG CGCCCGCTCG
GCCGAATACA TCTGCGACGA ATTGCGGATG CGCTACGGCA TTCCGCGGCT CGACATCGAC
GGCTTCGGCC ACAAGGCGCT CGGCGACAGC TTGCGCAAGG TCGGCCTGTT CTTCGGGATC
GAAGACCGCG CCGAGGCGAT CATCGCCGAG GAGACCGCCA AATGGGGTCC CGAACTCGCC
TGGTACAAGG AGCGCCTGCA AGGCAAGAAG GTGTGCCTGT GGCCGGGCGG CTCCAAGCTC
TGGCACTGGG CCCATGCCAT CCAGGAAGAA ATGGGCGTCC AGGTGGTCTC GGTCTACACC
AAGTTCGGCC ATCAGGGCGA CATGGAAAAG GGCGTCTCGC GTTGCGGCGA AGGCGCGCTG
GCGATCGATG ACCCCAACGA ACTCGAAAAT CAGGAAGCGC TGAAGACCCT GAAGCCGGAC
GTGATCTTCA CCGGCAAGCG GCCGGGCGAA GTCGCCAAGA AGATGCGGGT GCCCTATCTC
AACGCCCATG CTTACCACAA CGGCCCCTAC AAGGGCTGGG AGGGCTGGGT GCGCTTTGCC
CGCGACATCT ACAATGCGAT CTATTCGCCG ATGCATCAGC TGTCGGCGAT CGACATCTCC
AAGGACGACT ACGCGACCGA CAAGGGCTTC ACCACCCGGC GCATGCTGTC CGATGCCAAT
CTCTCCGACG AGTCAAAGGC GTCGCCGATG ACCGGCTATT CCGGCAAGTT CGACCCGATC
GCCGCCATCC GCGCCAAGAC CGCCGCCGAC TATCCGGTGT TTCCGCGTCG TAGCGTCACC
GAAGCCGCCG AGTAG
|
|---|
| Protein sequence | MPYHEFEVSK CIPERKQHAV VKGPGEDLTS CLPKGYLNTI PGSISERGCA YCGAKHVIGT
PMKDVIHLSH GPVGCTYDTW QTKRYISDNN DYQLKYTFAS DVKEKHIVFG AEKLLKQNIL
EAFKAFPTMK RMTIYQTCAT ALIGDDVNAI AAEVMEELPD VDIFVCNSPG FAGPSQSGGH
HKINIAWLNQ KVGTVEPKIT GDYVINYVGE YNIQGDQEVM IDFFKRMGIQ VLSTFTGNGS
YDDLRSMHGA HLNVLECARS AEYICDELRM RYGIPRLDID GFGHKALGDS LRKVGLFFGI
EDRAEAIIAE ETAKWGPELA WYKERLQGKK VCLWPGGSKL WHWAHAIQEE MGVQVVSVYT
KFGHQGDMEK GVSRCGEGAL AIDDPNELEN QEALKTLKPD VIFTGKRPGE VAKKMRVPYL
NAHAYHNGPY KGWEGWVRFA RDIYNAIYSP MHQLSAIDIS KDDYATDKGF TTRRMLSDAN
LSDESKASPM TGYSGKFDPI AAIRAKTAAD YPVFPRRSVT EAAE
|
|---|
| |