| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4658 |
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| Symbol | |
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| ID | 3972344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5211182 |
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| End bp | 5212618 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637927770 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_534499 |
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| Protein GI | 90426129 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.211901 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCCGCG CAGGCCTCGC CTGCGCCACC GCCGCCGCTG TGATAGCGGC GGCGGGGGGC
GCGCTGTCCG GTGGCACCGG ACATCTAACC CATGCACGCG ACATCGTCGC CACGTTGGTG
TCGCCGGCGG CGGCGCAGAG CGCCGAGGAG CCGATCTATT ACCAGGACCC CGACGGCAAG
CCGGTGTATT CGCCGACGCC GAAGACCACC GCCGACGGCC GGGCGTTTCG CGCGGTGCCG
CCCTCCGCCG ATCTCAATTT CGACGACGTC GAGGAGGCCG CGGCGCCTGC CGCGCCGGCG
CCGACGCCCG CGACCGCGAG CGGTGAGCGC AAGATTAAAT TCTATCGCAA TCCGATGGGG
CTGCCCGATA CGTCGCCTGT GCCGAAAAAA GATCCGATGG GGATGAACTA CATCCCGGTC
TATGAGGGCG AGGAGAGCGA CGACGGCTCG GTGTCGCTGT CGCCGCAGAA GATCCAGCGC
ACGGGGGTCA AATCCGAGCG CGCGGCGATG CGGCTGATCC GCACGACGAT CCGCGCGCCG
GGCGCGATCC AGCTCGATGA GCGCAGGGTC TCGGTGATCG CGATGCGTTC GGAGAGCTTC
ATCCAGAGCG TGGCCAACGT CACCACCGGC AGCAAAGTCG CCAAGGGCGA GCCGTTGATG
CAGGTCTATT CGCCGACGGT GTCGTCGGCG GCGGCCGAAT ACGTCGCCAC CATCAACTCC
AAGACCGTCG GCGGCGTCGC CACCTACGGC CGCGGTTCGC GGCAGCGGCT GGTCAATCTC
GACGTCCCGG AAGCCGCAAT CGTCGCGATA GAAAAAGGCG GCCCGGTGCC GACCGTGCTG
CAATGGTCGG CGCCGCGCGA CGGCATCGTG CTGGAGCGCA ACGTCATCGA GGGCGCCCGC
GCCAATCCCG GCGACGTGCT GTTTCGGATC GCCGATATCT CCCAGGTGTG GGCGCTGGTC
GACGTCGCCG AGCGCGACCT CGGCGCGCTG TCGGTCGGCC AGGCGGTGAG CGTGCGCGCG
CGCGGCTATC CCGGCCGGGT GTTCGAAGGC CGCGTCAGCG TGATCTATCC GCAGGTCAAT
CGCGACACCC GCACCGCGCG GCTTCGCATC GAACTGCCGA ATCCGGACAT GGCGCTGTTG
CCCGAGATGT ATCTCGACGC CGAGATCGAC ACCGGCAATC CGCAGCCGGT GCTGGCAGTG
CCGGACAGCG CGGTGCTGGA TTCCGGCGAG CGCCAGGTTG TGCTGGTGCA GCAGGGCGAG
GGCCGCTTCG CGCCGCGCGA GGTCAAGCTC GGCCATCGCG GCGGCGGCTA TGTTGAAGTT
CGCCAAGGCG TCAGTGACGG CGAGGCCGTG GTGGTCTCGG CGAATTTCCT GATCGATGCC
GAAAGCAATC TGAAGGCCGC GCTGAAAAGC TTCTCCGACG CCGGAGCGAT GAAATGA
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| Protein sequence | MSRAGLACAT AAAVIAAAGG ALSGGTGHLT HARDIVATLV SPAAAQSAEE PIYYQDPDGK
PVYSPTPKTT ADGRAFRAVP PSADLNFDDV EEAAAPAAPA PTPATASGER KIKFYRNPMG
LPDTSPVPKK DPMGMNYIPV YEGEESDDGS VSLSPQKIQR TGVKSERAAM RLIRTTIRAP
GAIQLDERRV SVIAMRSESF IQSVANVTTG SKVAKGEPLM QVYSPTVSSA AAEYVATINS
KTVGGVATYG RGSRQRLVNL DVPEAAIVAI EKGGPVPTVL QWSAPRDGIV LERNVIEGAR
ANPGDVLFRI ADISQVWALV DVAERDLGAL SVGQAVSVRA RGYPGRVFEG RVSVIYPQVN
RDTRTARLRI ELPNPDMALL PEMYLDAEID TGNPQPVLAV PDSAVLDSGE RQVVLVQQGE
GRFAPREVKL GHRGGGYVEV RQGVSDGEAV VVSANFLIDA ESNLKAALKS FSDAGAMK
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