Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4652 |
Symbol | |
ID | 3972241 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 5202504 |
End bp | 5204498 |
Gene Length | 1995 bp |
Protein Length | 664 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637927764 |
Product | Outer membrane autotransporter barrel |
Protein accession | YP_534493 |
Protein GI | 90426123 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.398364 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAGCA TCACGGCTAT TCGGGTCGTT CGGCGACGCG GCGACCGGCG CGGCGGCGTC ACGACACCGC GTGTCAAACG CGCCGCGGCG GCCACGGCAG TAGCGGTGCT GTCACTCGGC GCAACGCTCG GTTCGGCGCA GGCGCAGTTC ACGCGCGTCT ATGGCTTCGG CGACAGCTAT GCGGATACCG GCACCGCGCC GGGCGGCGCG TTTCGGCTCG GTCACGAGCC CTGTGTTTAT CCGGGCGTTT GCTCCTTCAC CGGCAGCACC ACCTTCGTGC AGACGCTGCA ATCGCTGTAT GCCGCGCCGG AGATGGTGAA TTATGCGATC GGCGGCGCGC GGACCAGCAA CTCCAACACC CTTGGCTTTC TCGGCAGCAA TTACGGCTTC CCGTATGAAC TCGCCCGGCT GGCCCATGAC GGCGTCCGGT TCACCGATCG CGACCTGATC GCGCTGTCGA TCGGCGGCAA TGATTCATCG CAGCTCGTCA ACGACGTCGG CGCCGCCAGG ACGTTGGGAA CACAGGCCGC GGCGCGCGCC GTCAACGGCA CCGGCGTCGG CACTATCACC GGCACCTTCG ATGGGGTCAC CTACAACGAC GTCGCGACCT ATGGCGTGCA GCAGCTGGTC GCCGCCGGGG CCCGCAACAT CGCCTGGTTC AGCGCCGGCA ATTCGAAGTA TTTTCCCGAA CCGGAGGGCG GTGCTGCGGT TCAGGCCCCG GCGCGCGACG CGTTTGCGCA TACCTATTAT CAGGAACTGC AGACCTTGCT GCGGCCGATG GCGCAGGCCG GCGTCCGCAT CTTCCTGTTC AACTATGAAA TCCTGCAGCG GCGGATCTTC GAGAATGCGG CGATCTACGG TTTCAGCGCC GTGCCGGGCT GCGAGGCCAA TGGCGGCGGC TCCATCCCTC AGGTCACAGG CTGCTTCTAC GAAAACTCGG TGCATCCGAC CGGCGCGGCG ATGGCGCTGA TCGCCAGCTA TATGGCCAAC CAGATCGACG CGCCGACCAC CGTGGTGCCG CAGGGCAGCA TCTCCACCGC GCTGGCGACG GGCTTCACCG GGTCGGTGTT CGGCCGGCTC GACGCCCAGC GTAGCCTCGC GCCGTTCGGC TTGGGCTCCG CGCTGGCCTA TGCGGGACCG CCGAAAGCGG CGCCAGCGGC CAACCCGGCG GATCGTTGGT CGATCTATGG CGCGGCCAGC TACGCCAACG GCAGCCGCGA CCGGCAATTC TACGGCTCCG GCTACGACTA CAATTCGGTC GGCGGTATCT TCGGGGCGGA GTATCGCCTC GACCAGAACT GGCGGGTGGG CGGGGTGTTC GGCTATTCGC AGCCGGACGT CGAACTCGGC GTGCAGAACG CGCGAGAGCG CATCGATGCC TATCAGTTCG CCGGCTACGC CTCCTACGCC GACGCGCATT GGTTCGCCGA CGGCCTGCTC GGCTACGGCC GCCATGACTT CGCGCTGCAG CGGCAAGGCA TCATCGATAC CATTCGGGGC AATACCAGGG CCGACGTGTT CACCGTCGCC GGAAAGGCCG GATACCTGTT CGATGTCGGC CAGCTCCGCG TCGGGCCGCT CGCCAGCCTG ACTTATAGCA ACGCGCAGAT CGACGGCTAC ACGGAAACCG GCGACGTGCT GCTGACGATG ACGGTCGATC GCCAGCGCGT CGAAGCGCTG ACCGGCGATA CCGGCGTGCA GCTGCGCTAC CCGCTGCTGA TCGGCGGCGG GATCTACAGC CCGTTCGTCA ACCTTACCGC CGCGCATGAT TTCATCGGCG AGGGCCGCAC CATCACCACC ATGCTGGTGT CGGCGCCGCT ATTGCCGATC CTGACCCCGG TTGCGGGCGA TGGCCGAACC TATGGCAGGG TCGCTGCGGG TGTCTCGGCG TTGGTGTCCG GCAATGTCTC GGCGACGCTG ACGGTCGGGT CGACCTTCGC GCGCAGCGGC GGCGACGATC TGGCGCTCAG CGGTGGCGTC AAGCTGGCGT TCTAG
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Protein sequence | MLSITAIRVV RRRGDRRGGV TTPRVKRAAA ATAVAVLSLG ATLGSAQAQF TRVYGFGDSY ADTGTAPGGA FRLGHEPCVY PGVCSFTGST TFVQTLQSLY AAPEMVNYAI GGARTSNSNT LGFLGSNYGF PYELARLAHD GVRFTDRDLI ALSIGGNDSS QLVNDVGAAR TLGTQAAARA VNGTGVGTIT GTFDGVTYND VATYGVQQLV AAGARNIAWF SAGNSKYFPE PEGGAAVQAP ARDAFAHTYY QELQTLLRPM AQAGVRIFLF NYEILQRRIF ENAAIYGFSA VPGCEANGGG SIPQVTGCFY ENSVHPTGAA MALIASYMAN QIDAPTTVVP QGSISTALAT GFTGSVFGRL DAQRSLAPFG LGSALAYAGP PKAAPAANPA DRWSIYGAAS YANGSRDRQF YGSGYDYNSV GGIFGAEYRL DQNWRVGGVF GYSQPDVELG VQNARERIDA YQFAGYASYA DAHWFADGLL GYGRHDFALQ RQGIIDTIRG NTRADVFTVA GKAGYLFDVG QLRVGPLASL TYSNAQIDGY TETGDVLLTM TVDRQRVEAL TGDTGVQLRY PLLIGGGIYS PFVNLTAAHD FIGEGRTITT MLVSAPLLPI LTPVAGDGRT YGRVAAGVSA LVSGNVSATL TVGSTFARSG GDDLALSGGV KLAF
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