| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4636 |
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| Symbol | |
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| ID | 3972147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5182552 |
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| End bp | 5183763 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637927748 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_534477 |
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| Protein GI | 90426107 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAG CCGGTTTGGT CTTTGCCCTC ATCGTTGCAC TTGCACTCGG CGCCGCAGGC
TATTTCTATT TCGGCGATCC GCAGCAAGTC GCGCAAAAGG CCGCCCCCCC GCCGGTCGAG
GTAGCGGTGA TCGAATTGCG CCGCGCAGAC GTGCCCTTGC CGCTGACCAA TGCCGGCCGC
GTCGCCGGAT TCCGCAATGT CGAGGTGCGG GCGCAGGTCG GCGGCACCAT CCTGAAGCGC
GAATTCGTCG AAGGCGCCAC CGTCAAGCAG GGCGACGTGC TGTTTCGCAT CGATCCGCGC
AGCTACCAGG CCGCGCTCGA CCGCGCCAAT GCGCAGGCGC TGCAGGCCCG TGCCACGCTG
GTGCAGGCCG AGGAGAATTT CGACCGCATT GAGCAACTGG CGCAGCGCCA GGTCGCGACC
GACAAGCAGC TGGAGGACGC CCGCGCGGCG CGCGATCTGG CCCGTGCCGC GCTGCTGAGC
GCGCAAGCCG ACATCGAGAC CGCCAAGCTC AATCTTGAAT TCACCACCGT CACCGCGCCG
GTGTCCGGGC CGACCAGCCT GTCGTCGCCG CCGGAAGGCG CGCTGGCGCA GGCGCAGCAG
ACCGTGCTCA CCACCATCAC CCAGCTCGAT CCGGCCTATG TGAATTTTTC GCTCAGCGAA
TCCGAATTCG TCGAGCTGCG CGGCATCAAT CAGGCACGCG ACCAGCCGCT GAAACGCTCC
GACATTGACG TCACGCTGCA GTTCGGCGAC GGCTCGCTCT ATCCGGCAAA GGGCCAGATC
AACGAGGCCG CCTCGGTGGT CGATCCGCGC ACCGGCACCC TGCAGATCCG CGCGATCTTC
CCCAATCCCG ACGGCGCGCT GCTGCCGAAC CAGTTCGTCC GCGTCAGGCT CTCCGGCGTG
GTGCTGCAAG GCGTTTTCGT GGTGCCGGAA CGGGCGGTGT CGCAGGGGCC GCAAGGCGCC
TTCGTGTATG TGCTCAATTC CGGCAATGCC AGCGTCATGT CACGGCCGAT CAAGCTCGAC
CGCAAGGTCG AGGGCGGCTG GGCGGTGAAG GAGGGATTGA ACGACGGCGA GAAGCTGGTG
GTCGACGGAC TGCTGCGAAT TCACCCCGGC GCCAAGGTCA AGCCGGTGCC GGTGAATCCC
GACGGCGAAG CCAATGGTCG GACCCGGGCA GAAGCGGCGG AGCCGGCCGC GTCGTCCGGC
CAGGCGAAGT AA
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| Protein sequence | MKSAGLVFAL IVALALGAAG YFYFGDPQQV AQKAAPPPVE VAVIELRRAD VPLPLTNAGR
VAGFRNVEVR AQVGGTILKR EFVEGATVKQ GDVLFRIDPR SYQAALDRAN AQALQARATL
VQAEENFDRI EQLAQRQVAT DKQLEDARAA RDLARAALLS AQADIETAKL NLEFTTVTAP
VSGPTSLSSP PEGALAQAQQ TVLTTITQLD PAYVNFSLSE SEFVELRGIN QARDQPLKRS
DIDVTLQFGD GSLYPAKGQI NEAASVVDPR TGTLQIRAIF PNPDGALLPN QFVRVRLSGV
VLQGVFVVPE RAVSQGPQGA FVYVLNSGNA SVMSRPIKLD RKVEGGWAVK EGLNDGEKLV
VDGLLRIHPG AKVKPVPVNP DGEANGRTRA EAAEPAASSG QAK
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