| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4635 |
|---|
| Symbol | |
|---|
| ID | 3972146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 5179409 |
|---|
| End bp | 5182552 |
|---|
| Gene Length | 3144 bp |
|---|
| Protein Length | 1047 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637927747 |
|---|
| Product | hydrophobe/amphiphile efflux-1 HAE1 |
|---|
| Protein accession | YP_534476 |
|---|
| Protein GI | 90426106 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.518068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTCGC GCTTCTTCAT CGACCGGCCG GTGTTCGCCG CGGTCATCTC GATCGGCATC
GTGCTGGTCG GGTTGATCTC GATGCGCGCG TTGCCGATCG CGCAATATCC GGCGATCGTG
CCGCCGGAGG TGCGGATCAG CGCGACCTAT CCCGGGGCTT CCGCCGAAAC CATCGCCGAG
ACGGTGGCCG CGCCGCTGGA GCAGCAGATC AACGGCGTCG AGAACATGCT CTATATGCGC
TCGACCTCGA CGGGGTCGGG CACGCTGTCG ATCTCGGTGA CGTTTGCGAT CGGCACCGAT
CCCGACCAGG CCACGATCAA CGTCAACAAT CGGGTGCAGC GCGCGACGCC GCTGCTGCCG
GCCGAAGTGG CGCGCCAGGG CGTCGTGGTG CAGAAGCGCT CCAGCGATAT CCTGCAGGTG
CTGACGATGT CATCGCCGGG TGAGCGCTAC GATACCGTCT TCATCGGCAA CTATGCGCTG
ATCAACGTCA TCGATGAATT GCGCCGCACG CCCGGCGTCG GCGATGCGTC GCTGTTCGGC
GCGTCCGACT ATTCGATGCG GATCTGGCTG CGTCCGGATA AGCTGGCGCA GTTCAGCCTG
ACGCCGGGCG ACATCGCCGC GGCGATCCGC GAGCAGAACG CCCAATTCGC CGCCGGCCGG
TTCGGCGAGG AACCGCAGAC CAAACCGAAC GCCTTCACCT ATTCGGTGAC GACGCAGGGC
CGCTTCGCCG ATCCTGCCGA ATTCGAGAAT ATCATCATCC GCTCCGACGA ATTCGGCGGC
GCACTGCGGG TCAAGGATGT CGCCCGGGTC GAGCTCGGCG CGCTGAACTA CAGTTTCGCG
GCGACCTATA ACGGTGCGCC GACGGTGCCG ATCGGGGTCT ATCTGCAGCC CGGCGCCAAC
GCGCTCGAGG TCTCGGCCAA CGTGCTTGCG ACGATGGACC GGCTGCAGGC CCGGTTCCCC
GAAGGTCTCG AATATCGCAA TCCGTTCAAC ACCACGCGCT TTGTCGAGGC ATCGATCGAA
CGGGTGGTCC GAACCTTCAT CGAGGCGATC GTGCTGGTGA CCTCGGTCGT GTTCCTGTTC
ATGCAGAACC TGCGGGCGAC GCTGATCCCG GTGATCGCCG TGCCGGTTTC GGTGATCGGC
ACCTTTGCCG GCATGTACGC GCTGGGGTTC TCGATCAACC TGCTGACGCT GTTCGGGCTG
GTGCTGTCGA TCGGCATCGT CGTCGACGAC GCCATCGTCG TGCTGGAGAA CATCGAGCGC
ATCATGCGCA CCGAAAAGAG ATCGCCCCGC GACGCGGCGA TCAAGGCGAT GGACGAGGTG
AGCGGGCCGG TCATCGCGAC CTCGCTGTCG CTGTGCGCGG TGTTCGTTCC GGTGTCGTTT
CTCGGCGGAC TTGCCGGCGA ATTGTACCGC CAGTTCGCGG TGACGATCGC GGTGTCGGTG
GTGATTTCCA GCATCGTGGC GCTGACGCTG ACGCCGGCGC TCGCTGCGCT GATCCTGAAG
CCGCAGCATC AGGAGCCGGC GCGGCCGTTC CGGATTTTCA ACCGCGGCTT CGAATGGCTG
ACCGACCGAT ACGGCGCCAT GGTCGCGTTC TTCATGCGGC GGGTGGTGGT CTCGCTGGCC
GTCGTCGGCG TGATGCTCGC CGCGACCGCC GTGCTGTTCA ACACGGTGCC GGGCAGTCTG
GTGCCGGAGG AGGACCAGGG CCGCGTGCTG ATGGTGACGT CGCTGCCGCC GGCCGCGTCG
CTCAGCCGGA CCCGCGAGAT CGGCCAGATC ACAGCCAACA CCATCAAGGA CATGCCCGAA
GTATCGGGCG TCGTCACGAT GTCCGGCTAC GACATCCTGT CGAGCGCGCA GAAGACCAAT
GCCGGGGTCT CCTTCATCAC CCTGAAGGAC TGGGCGGAGC GCACCACGCC AGAGTCGGAT
GCCCGGCAGT TCGCGCCGGC GCTGAGCCGG CTCAATGCCC TGTTTCGCGA CGGCGTCGTG
ATCGGTTTCA ATCCGCCGGC AATCCAGGGC ATCAGCACCA CCGGCGGGTT CGAATTGTAT
TTGCAAAATC GTTCCGGCGT CTCGCTGCAG GAATTAGCCG ATGCGGCTAA CCGGGTGGTC
GCCGAGGCGG CCAAGCGACC GGAACTGGCC GGGGTGCGCT CGCAATTTTC CACCTCGGTC
CCGCAATACC GGATCGACGT CGATCGCGAC AAGGCGAAGA CGCTCGGGGT GCCGATCGAC
AGCATCTTCC AAACCATGCA GAGCGGGTTC GGCAGCCTCT ACGTCAACGA TTTCACGTTG
TTCGGACGCA CCTACCGGGT CAGCCTGTCG TCGGAATCCG ACTTCCGCAG CGAGCCGGGC
GACCTGCGGT TCATCTACGC CCGCTCGGAG ACCGGCGCGA TGATTCCGCT GGATGCGGTG
GTCAAGGTCA AGCGCGTGCT CGGCCCGGAC TCGGTCGATC GCTTCAACAT CTTCCCCTCA
GCCAAGATTC TCGGCAATCC GGCGCCGGGA TTTTCTTCGG GGCAAGCGCT GGCCGCGATG
CGGGAGGTGG TTAGCAATAC GCTCGGGTCG GACTATTCGA TCGGCTGGAC CGGCTCGGCC
TACCAGGAGA TCTCGACCGA GGGCACCGGC TATCAGGGGT TTCTGTTCGG CCTGCTGATG
GTGTTCCTGA TCCTGGCCGC GCAATACGAG CGCTGGTCGC TGCCCTTGGC GGTGCTGACC
GCGGTGCCGT TTGCGCTGTT CGGTGCCATC TTGGCGATCT GGCTGCGCGG TCTGGAGAAC
AACATCTATT TCCAGATCGG GCTGGTGACG CTGATCGGAC TGTCAGCCAA GAACGCGATT
CTGATCGTGG AGTTTGCCGC GCGGCGTCAC CGCGAGGGAC TGTCGGTGGT GGACGCGGCA
TTGGAAGCCG CGCGGCTGCG GTTCCGGCCG ATCATCATGA CGTCGTTGAC GTTCATTCTC
GGCGTGATGC CGCTGGCGAT CGCGAACGGC GCCGGCTCCG CCAGCCAGCA CTCGATCGGC
ACCGGCGTGA TCGGCGGCAT GATCGCCGCC ACCGCGCTCG CCATCATCTT TGTGCCGCTG
TTCTTCCGCC TGTTGACCCG GAGCAGGGTG AAGGCCGAAG TGATTGCGAC CACAGAGAAC
AAGGTGCCGA CCAAATCACT CTAA
|
|---|
| Protein sequence | MFSRFFIDRP VFAAVISIGI VLVGLISMRA LPIAQYPAIV PPEVRISATY PGASAETIAE
TVAAPLEQQI NGVENMLYMR STSTGSGTLS ISVTFAIGTD PDQATINVNN RVQRATPLLP
AEVARQGVVV QKRSSDILQV LTMSSPGERY DTVFIGNYAL INVIDELRRT PGVGDASLFG
ASDYSMRIWL RPDKLAQFSL TPGDIAAAIR EQNAQFAAGR FGEEPQTKPN AFTYSVTTQG
RFADPAEFEN IIIRSDEFGG ALRVKDVARV ELGALNYSFA ATYNGAPTVP IGVYLQPGAN
ALEVSANVLA TMDRLQARFP EGLEYRNPFN TTRFVEASIE RVVRTFIEAI VLVTSVVFLF
MQNLRATLIP VIAVPVSVIG TFAGMYALGF SINLLTLFGL VLSIGIVVDD AIVVLENIER
IMRTEKRSPR DAAIKAMDEV SGPVIATSLS LCAVFVPVSF LGGLAGELYR QFAVTIAVSV
VISSIVALTL TPALAALILK PQHQEPARPF RIFNRGFEWL TDRYGAMVAF FMRRVVVSLA
VVGVMLAATA VLFNTVPGSL VPEEDQGRVL MVTSLPPAAS LSRTREIGQI TANTIKDMPE
VSGVVTMSGY DILSSAQKTN AGVSFITLKD WAERTTPESD ARQFAPALSR LNALFRDGVV
IGFNPPAIQG ISTTGGFELY LQNRSGVSLQ ELADAANRVV AEAAKRPELA GVRSQFSTSV
PQYRIDVDRD KAKTLGVPID SIFQTMQSGF GSLYVNDFTL FGRTYRVSLS SESDFRSEPG
DLRFIYARSE TGAMIPLDAV VKVKRVLGPD SVDRFNIFPS AKILGNPAPG FSSGQALAAM
REVVSNTLGS DYSIGWTGSA YQEISTEGTG YQGFLFGLLM VFLILAAQYE RWSLPLAVLT
AVPFALFGAI LAIWLRGLEN NIYFQIGLVT LIGLSAKNAI LIVEFAARRH REGLSVVDAA
LEAARLRFRP IIMTSLTFIL GVMPLAIANG AGSASQHSIG TGVIGGMIAA TALAIIFVPL
FFRLLTRSRV KAEVIATTEN KVPTKSL
|
|---|
| |