| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4625 |
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| Symbol | |
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| ID | 3972135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 5166815 |
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| End bp | 5169562 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637927736 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_534466 |
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| Protein GI | 90426096 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATCGA TATTTTCGCA TCCGACGATT CATCTTGGCA AAGACGCAAT CGCCCCGTGC
GACGACCAAT CGATCGACCC GAACTCAATC ACCCGCCGCG ATCCGACCCG ATGGCTGATG
CTGTGCGGCG TTCTGTTGAT CTCCTCGATC GTGATTGCGA CCGCGCTGAT CATCGATCAA
TTCCGGGAGC GCGCGCTGCA GAACAGCGAA CGCGAACTCA GCAATACGGC GCTGCTGCTG
GCACGCCATT TCGATCGCGA GCTCGACGAT GTGGCGGCGG TCCAAGACGA CATCGCCACA
CAGCTTCAGT TAAGCTCGCC GGGCGGGTTT GCCGGAATGG GCACACTGAA CGCCCACGAG
CTGCTGCGCG CCAAGTTGAG CGGAGCACAT GACGTCTCCG GCATCAATCT GTTCGACGCC
CGCGGCATCT TGATCAATTC CTCGGAGCGC TGGCCGGTGC CGGACGTTTC GATCGCCGAC
CGGGCGTATT TCGGGACCCT CGCATCCGGC GAGACGCGCG AGCAGTCGGC CATCGAACTG
GTGCAAGGCC GGTTGTCGCA GGGGTGGTCC TTGGTGCTGT CGCGCCGATT GAACGGCCCG
AACGGCGAAT TCGTCGGGTT GCTCACCCGC GGCATGTCAC CCGACCGCTT CGAGCAGTTC
TTCGCCTCGG TGGCGCTCGC CAAGGACTCC GCGGTCGTGA TGCATCATCG CGACGGCACC
TTGCTGGCTC GCCATCCCCA CGTCGAAGAG TTGCTCGGGA AGAATTTCAA GACCGGGCGG
GAGGACCAAA GGCGGCTGTT CGAAACGCCG GGGCTCGCGC GACTGCCGAG CCCGATCGAT
GGTCAGGAGC GGCTGGTGGC CTCGCACGCT TTGACCGACT TCCCGCTCCT GATGGTGGTC
ACCACCACGG TCTCCTCGTC GCTCGCCGAC TGGTATCGAC AGACCCGCTT CCTGATTATC
GTCGCCGCCG GCTCGACCAT GATCATCGCG GCCATTCTGT TCCTGATCAT AAGGCAGCTG
ACCCGGCAGC ACCGTGCCAC GCAACGCCAG CTGACGCGCG ACAAGCAACG TCTCAGCACG
GCGATCAACA ATATGACGCA AGGGCTCTTG CTGTTCGATT CGTCGGCGCG GCTGGTGGTC
TGCAATCAAC GCTACATGGA GATGTACGGG CTGTCGGCTG AGGTGGTGAA GCCGGGCTGC
TCGCTTCGAC AGATCCTGGC CGAACGCAAG GCCGCCGGTT CTTTCGAAGG CGACATCGAC
GCTTATTGCG CCGACACGCT GAGCCACGTC GCGGCCCGCA ATGTCACGGT CGCCGTGACC
CCGGACGGCC GTTCGATTCA GATCGCAACC GAGCCCGCCC CCGAGGGGGG CTGGGTTGCC
ACCCACGAAG ACATCACCGA CCGGCGACGC TCCGAAGAGC GCATCGCCTA TCTGGCGCAT
TACGACGAAC TGACCAGCCT GCCCAATCGC ACCTCGTTTC GGGAGCGGAT CGAGGACGAG
TTCGAGCGTG TCGCGCGCGG CGGCACGCTG GCGCTGCTCT ACATCGACAT CGACGAATTC
AAGGCCATCA ACGACTCGTT GGGCCACCCG GTCGGCGACG CGTTGCTCAA GATCGTGGCC
GCGCGGCTGA AGGCCTGCCT TCGCGAAACC GACTTCGTGG CGCGACTGGG CGGCGACGAA
TTCGCCATTC TGCAAACCGC GCCCCGCGAT GTCCAGGAGG TCACCGAGTT GGTGGCGCGG
CTGTTCGAAA CAATTCGTGC CCCGTGCGAA TGCCTCGGGC ACCAGATCTC CACCGACGCC
AGCATCGGCA TCGCTTTGGC GCCGCCCCAC GGCACCGACA CCGATCAATT GATCAAGAAC
GCCGATCTTG CGATGTACCA AGCCAAGGCG GACGGACGCC GGACCTGCCG CTTCTTCGAA
CCGCGGATGG AGGCCAGCGC CAAGGAGCGC CGCACCCTGG AGCTCGAGCT GCGGAAAGCG
ATCGCAGATT GCGCTTTCGA GATTTACTAC CAACCGATCG TCGAGCTTCG GAACGGCGAC
GTGATCGGCT GCGAAGCCTT GCTGCGCTGG CGCCATCCGC AGCGCGGCAT GATCTCGCCG
GCCAAGTTCA TCCCGGTGGC CGAAGCGACC GGGCTGATCA ACGAGCTCGG CGAATGGGTG
TTGCGCACGG CGTGCGCCGA GGCGGCGAAC TGGCCGGCGG AGATGAGCGT CGCCGTCAAT
GTGTCGCCGG TGCAGTTCAA ATCACGAACC CTGCCCCTCA AGGTCGCGGC AGCGCTAGCC
GCCTCCGGAC TACCCGCGAG CCGATTGGAG CTCGAGATCA CCGAGGCGGT GCTGATCGAC
GACGACGAAA CGGCACTGAG CGTGCTGCAT GAACTGAAGA CGCTCGGCGT TCGCATCGCG
TTGGACGATT TCGGCACCGG CTATTCGTCG CTCAGCTATC TGCAGCGCTT TCCGTTCGAC
AAGATCAAGA TCGACCGCTG CTTCATCGAC GGCATCGCCA GGCCGGACGG CGCCTCGGCC
ATCGTGCAGG CGGTGGTCAA CATCGCGACC GCGCGCCACA TGACCACCAC CGCGGAGGGC
GTCGAAACCG CCGAGCAACG CGACCTGCTG CGCGGCTTGG GCTGCACGCA TATGCAGGGC
TATCTGTTCA GCCCGGCGAT CGCCCCCGAC ACGGTCAGGC AGCTGTTCGC GGGGGGCGGC
AATGCCGCCG GATCGCGGCG ATCGCGCGCC GACCGAGCTC GGCGATGA
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| Protein sequence | MPSIFSHPTI HLGKDAIAPC DDQSIDPNSI TRRDPTRWLM LCGVLLISSI VIATALIIDQ
FRERALQNSE RELSNTALLL ARHFDRELDD VAAVQDDIAT QLQLSSPGGF AGMGTLNAHE
LLRAKLSGAH DVSGINLFDA RGILINSSER WPVPDVSIAD RAYFGTLASG ETREQSAIEL
VQGRLSQGWS LVLSRRLNGP NGEFVGLLTR GMSPDRFEQF FASVALAKDS AVVMHHRDGT
LLARHPHVEE LLGKNFKTGR EDQRRLFETP GLARLPSPID GQERLVASHA LTDFPLLMVV
TTTVSSSLAD WYRQTRFLII VAAGSTMIIA AILFLIIRQL TRQHRATQRQ LTRDKQRLST
AINNMTQGLL LFDSSARLVV CNQRYMEMYG LSAEVVKPGC SLRQILAERK AAGSFEGDID
AYCADTLSHV AARNVTVAVT PDGRSIQIAT EPAPEGGWVA THEDITDRRR SEERIAYLAH
YDELTSLPNR TSFRERIEDE FERVARGGTL ALLYIDIDEF KAINDSLGHP VGDALLKIVA
ARLKACLRET DFVARLGGDE FAILQTAPRD VQEVTELVAR LFETIRAPCE CLGHQISTDA
SIGIALAPPH GTDTDQLIKN ADLAMYQAKA DGRRTCRFFE PRMEASAKER RTLELELRKA
IADCAFEIYY QPIVELRNGD VIGCEALLRW RHPQRGMISP AKFIPVAEAT GLINELGEWV
LRTACAEAAN WPAEMSVAVN VSPVQFKSRT LPLKVAAALA ASGLPASRLE LEITEAVLID
DDETALSVLH ELKTLGVRIA LDDFGTGYSS LSYLQRFPFD KIKIDRCFID GIARPDGASA
IVQAVVNIAT ARHMTTTAEG VETAEQRDLL RGLGCTHMQG YLFSPAIAPD TVRQLFAGGG
NAAGSRRSRA DRARR
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