Gene RPC_4625 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4625 
Symbol 
ID3972135 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp5166815 
End bp5169562 
Gene Length2748 bp 
Protein Length915 aa 
Translation table11 
GC content65% 
IMG OID637927736 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_534466 
Protein GI90426096 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCATCGA TATTTTCGCA TCCGACGATT CATCTTGGCA AAGACGCAAT CGCCCCGTGC 
GACGACCAAT CGATCGACCC GAACTCAATC ACCCGCCGCG ATCCGACCCG ATGGCTGATG
CTGTGCGGCG TTCTGTTGAT CTCCTCGATC GTGATTGCGA CCGCGCTGAT CATCGATCAA
TTCCGGGAGC GCGCGCTGCA GAACAGCGAA CGCGAACTCA GCAATACGGC GCTGCTGCTG
GCACGCCATT TCGATCGCGA GCTCGACGAT GTGGCGGCGG TCCAAGACGA CATCGCCACA
CAGCTTCAGT TAAGCTCGCC GGGCGGGTTT GCCGGAATGG GCACACTGAA CGCCCACGAG
CTGCTGCGCG CCAAGTTGAG CGGAGCACAT GACGTCTCCG GCATCAATCT GTTCGACGCC
CGCGGCATCT TGATCAATTC CTCGGAGCGC TGGCCGGTGC CGGACGTTTC GATCGCCGAC
CGGGCGTATT TCGGGACCCT CGCATCCGGC GAGACGCGCG AGCAGTCGGC CATCGAACTG
GTGCAAGGCC GGTTGTCGCA GGGGTGGTCC TTGGTGCTGT CGCGCCGATT GAACGGCCCG
AACGGCGAAT TCGTCGGGTT GCTCACCCGC GGCATGTCAC CCGACCGCTT CGAGCAGTTC
TTCGCCTCGG TGGCGCTCGC CAAGGACTCC GCGGTCGTGA TGCATCATCG CGACGGCACC
TTGCTGGCTC GCCATCCCCA CGTCGAAGAG TTGCTCGGGA AGAATTTCAA GACCGGGCGG
GAGGACCAAA GGCGGCTGTT CGAAACGCCG GGGCTCGCGC GACTGCCGAG CCCGATCGAT
GGTCAGGAGC GGCTGGTGGC CTCGCACGCT TTGACCGACT TCCCGCTCCT GATGGTGGTC
ACCACCACGG TCTCCTCGTC GCTCGCCGAC TGGTATCGAC AGACCCGCTT CCTGATTATC
GTCGCCGCCG GCTCGACCAT GATCATCGCG GCCATTCTGT TCCTGATCAT AAGGCAGCTG
ACCCGGCAGC ACCGTGCCAC GCAACGCCAG CTGACGCGCG ACAAGCAACG TCTCAGCACG
GCGATCAACA ATATGACGCA AGGGCTCTTG CTGTTCGATT CGTCGGCGCG GCTGGTGGTC
TGCAATCAAC GCTACATGGA GATGTACGGG CTGTCGGCTG AGGTGGTGAA GCCGGGCTGC
TCGCTTCGAC AGATCCTGGC CGAACGCAAG GCCGCCGGTT CTTTCGAAGG CGACATCGAC
GCTTATTGCG CCGACACGCT GAGCCACGTC GCGGCCCGCA ATGTCACGGT CGCCGTGACC
CCGGACGGCC GTTCGATTCA GATCGCAACC GAGCCCGCCC CCGAGGGGGG CTGGGTTGCC
ACCCACGAAG ACATCACCGA CCGGCGACGC TCCGAAGAGC GCATCGCCTA TCTGGCGCAT
TACGACGAAC TGACCAGCCT GCCCAATCGC ACCTCGTTTC GGGAGCGGAT CGAGGACGAG
TTCGAGCGTG TCGCGCGCGG CGGCACGCTG GCGCTGCTCT ACATCGACAT CGACGAATTC
AAGGCCATCA ACGACTCGTT GGGCCACCCG GTCGGCGACG CGTTGCTCAA GATCGTGGCC
GCGCGGCTGA AGGCCTGCCT TCGCGAAACC GACTTCGTGG CGCGACTGGG CGGCGACGAA
TTCGCCATTC TGCAAACCGC GCCCCGCGAT GTCCAGGAGG TCACCGAGTT GGTGGCGCGG
CTGTTCGAAA CAATTCGTGC CCCGTGCGAA TGCCTCGGGC ACCAGATCTC CACCGACGCC
AGCATCGGCA TCGCTTTGGC GCCGCCCCAC GGCACCGACA CCGATCAATT GATCAAGAAC
GCCGATCTTG CGATGTACCA AGCCAAGGCG GACGGACGCC GGACCTGCCG CTTCTTCGAA
CCGCGGATGG AGGCCAGCGC CAAGGAGCGC CGCACCCTGG AGCTCGAGCT GCGGAAAGCG
ATCGCAGATT GCGCTTTCGA GATTTACTAC CAACCGATCG TCGAGCTTCG GAACGGCGAC
GTGATCGGCT GCGAAGCCTT GCTGCGCTGG CGCCATCCGC AGCGCGGCAT GATCTCGCCG
GCCAAGTTCA TCCCGGTGGC CGAAGCGACC GGGCTGATCA ACGAGCTCGG CGAATGGGTG
TTGCGCACGG CGTGCGCCGA GGCGGCGAAC TGGCCGGCGG AGATGAGCGT CGCCGTCAAT
GTGTCGCCGG TGCAGTTCAA ATCACGAACC CTGCCCCTCA AGGTCGCGGC AGCGCTAGCC
GCCTCCGGAC TACCCGCGAG CCGATTGGAG CTCGAGATCA CCGAGGCGGT GCTGATCGAC
GACGACGAAA CGGCACTGAG CGTGCTGCAT GAACTGAAGA CGCTCGGCGT TCGCATCGCG
TTGGACGATT TCGGCACCGG CTATTCGTCG CTCAGCTATC TGCAGCGCTT TCCGTTCGAC
AAGATCAAGA TCGACCGCTG CTTCATCGAC GGCATCGCCA GGCCGGACGG CGCCTCGGCC
ATCGTGCAGG CGGTGGTCAA CATCGCGACC GCGCGCCACA TGACCACCAC CGCGGAGGGC
GTCGAAACCG CCGAGCAACG CGACCTGCTG CGCGGCTTGG GCTGCACGCA TATGCAGGGC
TATCTGTTCA GCCCGGCGAT CGCCCCCGAC ACGGTCAGGC AGCTGTTCGC GGGGGGCGGC
AATGCCGCCG GATCGCGGCG ATCGCGCGCC GACCGAGCTC GGCGATGA
 
Protein sequence
MPSIFSHPTI HLGKDAIAPC DDQSIDPNSI TRRDPTRWLM LCGVLLISSI VIATALIIDQ 
FRERALQNSE RELSNTALLL ARHFDRELDD VAAVQDDIAT QLQLSSPGGF AGMGTLNAHE
LLRAKLSGAH DVSGINLFDA RGILINSSER WPVPDVSIAD RAYFGTLASG ETREQSAIEL
VQGRLSQGWS LVLSRRLNGP NGEFVGLLTR GMSPDRFEQF FASVALAKDS AVVMHHRDGT
LLARHPHVEE LLGKNFKTGR EDQRRLFETP GLARLPSPID GQERLVASHA LTDFPLLMVV
TTTVSSSLAD WYRQTRFLII VAAGSTMIIA AILFLIIRQL TRQHRATQRQ LTRDKQRLST
AINNMTQGLL LFDSSARLVV CNQRYMEMYG LSAEVVKPGC SLRQILAERK AAGSFEGDID
AYCADTLSHV AARNVTVAVT PDGRSIQIAT EPAPEGGWVA THEDITDRRR SEERIAYLAH
YDELTSLPNR TSFRERIEDE FERVARGGTL ALLYIDIDEF KAINDSLGHP VGDALLKIVA
ARLKACLRET DFVARLGGDE FAILQTAPRD VQEVTELVAR LFETIRAPCE CLGHQISTDA
SIGIALAPPH GTDTDQLIKN ADLAMYQAKA DGRRTCRFFE PRMEASAKER RTLELELRKA
IADCAFEIYY QPIVELRNGD VIGCEALLRW RHPQRGMISP AKFIPVAEAT GLINELGEWV
LRTACAEAAN WPAEMSVAVN VSPVQFKSRT LPLKVAAALA ASGLPASRLE LEITEAVLID
DDETALSVLH ELKTLGVRIA LDDFGTGYSS LSYLQRFPFD KIKIDRCFID GIARPDGASA
IVQAVVNIAT ARHMTTTAEG VETAEQRDLL RGLGCTHMQG YLFSPAIAPD TVRQLFAGGG
NAAGSRRSRA DRARR