Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4617 |
Symbol | |
ID | 3972108 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 5155970 |
End bp | 5157412 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637927728 |
Product | GntR family transcriptional regulator |
Protein accession | YP_534458 |
Protein GI | 90426088 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGACC TTCTATCCGG TTTGATCAAA TTGTCGCCGG ACAGCGACGA GACATTGTTG CGACAGCTCA CGCAACAATT GAGATCACTC ATCACGAGCG GACGTTTGGC ACCAGCTCAG CGCTTGCCTT CAAGTCGCGA TCTGGCTCAA TCACTGAGTG TCGGCCGCAA CACAGTCTCG TTTGCGATAG AGCAGCTTGC AGCCGAGGGT TATTTGACGA CTTCGCCTGG CCGACGGGCA GTCGTGTCAA TTGGAGCCTC GCTTGATGCA AGGAAGCCGC AGCGAATAAA GACCGATCAG CGTACCGTGG AACTCAGGGT GTCGCCTTGG GCACGCAGTC TCCATAACGC GAGTTGGCCG CCAATCTATA GGGGGCGACC GCGCGCGTTT CAGCCGGGAT TGGCTGACGA GCGGGAGTTT CCTCACGATA TCTGGGCCCG CTGTCTGCGG CGTGCAGCCC GTAGCGCCCG TGTACGCGGA GACAGTTCCC ACAACAGCGC CGCACTGCGG AAAGCATTGC AGCAGCATCT GGCGGAGCAT AGGGGCGTCA AGGCGACACC TGACCAAATC ATGATTGTGC CTTCCGCACA GGCGGGGATT GCGTTGATCG CCAAAGTGAT GATCGGTACG GGCGATCTCG CCTGGATTGA AAGTCCAGGG TATGGCGGGG CGTTCGCCGC ATTGCAAAGC GCCGGCGCTA TCGTCGCTGG AGTGCCGCTC GATGAGTTTG GTATGGCTTT GGGCGAACGC AAGGACATTC CTCGCCTGAT TTTTGTAACC CCGTCCCATC AGTACCCGAC GGGACGGCTG ATGCCTGCCG GTCGTCGGCT GGAGTTGCTC CGATTCGCAG CATCCGTTGG GGCTTCGATC GTCGAGGATG ACTACGACAG CGAATTTCAT TATGAGGCGC GCCCAGTGTC TGCATTACAG GGGATGGGTC TTTCGACAAC AGTCCTTTAC GTCGGCACGT TTTCGAAATC GATGTTTGCG GATATTCGGA TTGGCTACAT CATCGTTCCC GAAAGACTCA TCGAGATATT CGAATTAGCG CAGCGCCATA TGGGATTGTC GGCAGCGATA CCGATGCAGG ACGCGTTGGC CGAGTTCATT CGTAATGGAA TGTACCTCGC TCACGTCCGA AAAATGACCC GCCTCTACAA GGAACGGCGC GACCAATTGC TGAAGGCCCT CGCATCCGAG ACGGGCGATC GGCTGTCGAT CGAGATCCCA GCGGGGGGGA TGCAACTCTT GGCTCGATGT GGTGCTTTTG CGAGAGACGA TCAGCTATCG GCGCGGCTTC TTGAAGCGGG AGTCGTCGCC CGCCCCTTGT CGAGCATGGT CTTTCACAAG ACTAAGGCGC AGGGGCTCTT TCTCGGCTTC GCCGCGTGGA ATGACGTCGA GATCGAGCGG GCTGCTCGCA TCCTTGGCAG GATTGTCCGT TGA
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Protein sequence | MGDLLSGLIK LSPDSDETLL RQLTQQLRSL ITSGRLAPAQ RLPSSRDLAQ SLSVGRNTVS FAIEQLAAEG YLTTSPGRRA VVSIGASLDA RKPQRIKTDQ RTVELRVSPW ARSLHNASWP PIYRGRPRAF QPGLADEREF PHDIWARCLR RAARSARVRG DSSHNSAALR KALQQHLAEH RGVKATPDQI MIVPSAQAGI ALIAKVMIGT GDLAWIESPG YGGAFAALQS AGAIVAGVPL DEFGMALGER KDIPRLIFVT PSHQYPTGRL MPAGRRLELL RFAASVGASI VEDDYDSEFH YEARPVSALQ GMGLSTTVLY VGTFSKSMFA DIRIGYIIVP ERLIEIFELA QRHMGLSAAI PMQDALAEFI RNGMYLAHVR KMTRLYKERR DQLLKALASE TGDRLSIEIP AGGMQLLARC GAFARDDQLS ARLLEAGVVA RPLSSMVFHK TKAQGLFLGF AAWNDVEIER AARILGRIVR
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