| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4616 |
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| Symbol | |
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| ID | 3972107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 5154488 |
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| End bp | 5155732 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637927727 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_534457 |
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| Protein GI | 90426087 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATTG AGCCCGAGCC GCGCGAGCCG GAGCTGATCG CGCCCGAGCC GGACGCGCCG
CCGCCGCGGG TGTCGCGCCG CAAGCTCGGC CTCGCCGGGC TGCTCGGGGT GAGCGTCGCC
GCGGTGATCG TGGTCACCGG GATCATGGCG CGCGACAAGA GCAACGCCGA GTTGCGCGAT
TGGACCGACG CCCAGGCGAT CCCCAGCGTC GCGGTGGCGT TGCCGGACGC CAAGCTGCTC
ACCGCCACGC TCGATTTGCC CGGCCGGCTG GAGGCGTATT CGCGCGCCCC GATCTTCGCC
CGGGTTTCGG GCTATCTGAA AAGCTGGAGC GCCGATATCG GCGCCAAAGT GAAGGCCGGC
CAGGTGATCG CCGAGATCGA GGCGCCGGAT CTCGATCAGC AATTGCTGCA GGCCCGCGCC
GATCTCGCCA GCCAGCAAGC TTCCGCGCGG CTCTCCGAAG CCACCTTGAA CCGCCGCAAG
ACGCTGGTGG CGTCGAACTT CGTCTCGGCG CAGGAAATCG ACGAGCGCAC CGCCGACCTC
GCCAACAAGA AGGCGGCGGT GAATTCCGGC CAGGCCAATG TCGAACGGCT GGAGGCGTTG
GCCGGCTACA AGAACATCAC CGTGCCGTTC GACGGCGTGA TCACCGAGCG CAACACCGAC
GTCGGCGCGC TGATCTCCGG CGGCGCCGGC ACTGGCCCCG CGATGTTCGT GGTGTCCGAC
ATCACCAAGC TCAGGGTCTA TGTCAACGTA CCGCAGAGCT ACGTGCCGGC GATCAAGATC
GGCGCCAAGG CCGAGCTGAC GCTGCCGGAC TATCCCAACC GCGCCTTCAC CGCGACGCTG
GAAGCCTCTT CGCAGGCCGT CGATGTCGGC TCCGGCACCA CGCGGATGCA ATTGGCGCTG
GACAATTCCC GCGGCGAGTT GATGCCGGGC GGCTATGCCA ATGTGCGGCT CAACCTGTCG
CACGACGGCG CGCCGCTGCA CATTCCGGCG AGCGCCCTGG TGTTCGGCCG CAACGGCCTG
CGGGTCGCCA CCGTCGGCCC CGACGACCGG GTACTGTTCA AGAAAGTGGC GATCGCCCGC
GATCTCGGCC GCGACATCGA GATCGCCTCG GGGCTGGCTT CTGAGGATCG CATCATCACC
GCGCCGCCGG ACGGCATCAA CGACGGCGAC CCGGTGCGCG TGGTGTCCGG GCCAAAGTCA
GCCAAGCCCG CCACCGCCTC GGAGAAGCAG GACTCCAAGG GGTGA
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| Protein sequence | MSIEPEPREP ELIAPEPDAP PPRVSRRKLG LAGLLGVSVA AVIVVTGIMA RDKSNAELRD
WTDAQAIPSV AVALPDAKLL TATLDLPGRL EAYSRAPIFA RVSGYLKSWS ADIGAKVKAG
QVIAEIEAPD LDQQLLQARA DLASQQASAR LSEATLNRRK TLVASNFVSA QEIDERTADL
ANKKAAVNSG QANVERLEAL AGYKNITVPF DGVITERNTD VGALISGGAG TGPAMFVVSD
ITKLRVYVNV PQSYVPAIKI GAKAELTLPD YPNRAFTATL EASSQAVDVG SGTTRMQLAL
DNSRGELMPG GYANVRLNLS HDGAPLHIPA SALVFGRNGL RVATVGPDDR VLFKKVAIAR
DLGRDIEIAS GLASEDRIIT APPDGINDGD PVRVVSGPKS AKPATASEKQ DSKG
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