Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4593 |
Symbol | |
ID | 3971892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 5125570 |
End bp | 5127228 |
Gene Length | 1659 bp |
Protein Length | 552 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637927704 |
Product | malonate decarboxylase alpha subunit |
Protein accession | YP_534434 |
Protein GI | 90426064 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG4670] Acyl CoA:acetate/3-ketoacid CoA transferase |
TIGRFAM ID | [TIGR01110] malonate decarboxylase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.971648 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGTCG CAACAAGCGA AGTGGCCGGT GCTCGGTCCT GGGCAACACG CCGCGAAGGC AAACAGCGTC GCATGGCACT CGTCAGCCCA TGGATGAACG GCAAATTCCT GCCGCAAAAG AAGATCGTCG AAGCGCTCGA GACCCTCTTG GTCCCCGGCG ATCGGGTGAT CATCGAAAGC GTGCAGAAGC AGGCGGATTT TCTGTCCCGC TCGCTCGCCA AGGTGAACCC GAAGAAGATT CATGACCTCA AGGCGGTGAT CTGGGCGATC GCGCGTCCCG ATCACATGGA GATCTTCGAG CTCGGCATCG CCAGCGAAGT CGACTTCAGC TTCGCCGGTC CGCAGAGCCT GCGGTTGGCG CAGATGCTCG ACGACGGCCA GATCAAGGTC AATTCGATCA ACACCTATGT CGAGCTGTCG GCCCGGATGT TCGTCGATCT GATCCCGAAC GCGGTGCTGG TCTGCGCCGA CATGGCCGAC CGCGAGGGCA ACCTCTACAC CGGTGCCAAC ACCGAAGACA CGCCGTCGAT GGTGGAAGCC GCGGCGTTCC GCGACGGCAT CGTCATCGTC CAGGTCAACC AGATCGTCGA CAAGCTGCCG CGCATCGACA TTCCGGGCGG CTGGATCGAC GTCATCGTCG AGGGCGATCG TCCCTACGCC AAGGAGCCGA TCCAGACCCG CGACCCGAAG GACATCAAGG AGCTGCAGAT CCTCACCGCG ATGATGGTGA TCCGCGGCGT CTACGAGCGG CATCAGGTGA CCTCGCTCAA CCACGGCGTC GGCTTCGACA CCGCGGCGAT CGAGCTCTTG CTGCCGACCT ATGGCGGCAA GCTCGGGCTG AAGGGCAAGA TCTGCCGCAA CTGGATTCTC AACCCGCAGC CGACCTTGAT CCCGGCGATC GAGAGCGGTT GGGTCGAGAG CATCCACAGC TTCGGCAACG AAGACGGCAT GGAGAAGTAC GTCGCGGCGC GCCCCGACAT CTACTTCACC GGTGCGGACG GCAGCCTGCG CTCCAATCGG GTGTTCGCGC AGCTCGCCGG CCACTACGCG GTCGATTTGT TCGCGGGCTC GACCCTGCAG ATCGACGCCC AGGGCAACTC CTCGACGGTC ACCAAAGGAC GTATTGCCGG CTTCGGCGGC GCCCCCAACC TCGGCAGCGA CGCGCGCGGC CGCAGGCATC CGTCGGCCGC CTGGTTGTCG CTGATCACCT CCGACGACGC CATCGTGCGC GGCCAAAAGC TCTGCGTGCA GGTGGTGGAG ACCTTCAAGG CCGGCGGCGT GCCGCTGTTC GTCGAAACCC TCGACGCGGT CCAGGTCGGC AAGGACGCCA AGCTGCCGAT CGCGCCGGTG ATGATCTACG GTGAAGACGT CACCCACGTC GCCACCGAAG AAGGCATCGC CTACCTCTAC AAGGCAGACG GCATCGAAGA GCGCCGCGCC GCGGTCGCAG CGGTCGCCGG CGTCACCAAG GTCGGCCTCA AGTCCACCGC CAAGCAGGTC AAGGCGCTGC GCGAAAAGGG CGTGGTGGCT TATCCGGAAG ATCTCGGCGT GCGTCGCACC GACGCCAACC GTTCGTTGCT GTCGGCGCGC AGCATGAAGG ATCTGGTGAC CTGGTCCGGT GGACTTTACG AGCCGCCGGC ACGCTTCAGG AGCTGGTGA
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Protein sequence | MDVATSEVAG ARSWATRREG KQRRMALVSP WMNGKFLPQK KIVEALETLL VPGDRVIIES VQKQADFLSR SLAKVNPKKI HDLKAVIWAI ARPDHMEIFE LGIASEVDFS FAGPQSLRLA QMLDDGQIKV NSINTYVELS ARMFVDLIPN AVLVCADMAD REGNLYTGAN TEDTPSMVEA AAFRDGIVIV QVNQIVDKLP RIDIPGGWID VIVEGDRPYA KEPIQTRDPK DIKELQILTA MMVIRGVYER HQVTSLNHGV GFDTAAIELL LPTYGGKLGL KGKICRNWIL NPQPTLIPAI ESGWVESIHS FGNEDGMEKY VAARPDIYFT GADGSLRSNR VFAQLAGHYA VDLFAGSTLQ IDAQGNSSTV TKGRIAGFGG APNLGSDARG RRHPSAAWLS LITSDDAIVR GQKLCVQVVE TFKAGGVPLF VETLDAVQVG KDAKLPIAPV MIYGEDVTHV ATEEGIAYLY KADGIEERRA AVAAVAGVTK VGLKSTAKQV KALREKGVVA YPEDLGVRRT DANRSLLSAR SMKDLVTWSG GLYEPPARFR SW
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