Gene RPC_4593 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4593 
Symbol 
ID3971892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp5125570 
End bp5127228 
Gene Length1659 bp 
Protein Length552 aa 
Translation table11 
GC content64% 
IMG OID637927704 
Productmalonate decarboxylase alpha subunit 
Protein accessionYP_534434 
Protein GI90426064 
COG category[I] Lipid transport and metabolism 
COG ID[COG4670] Acyl CoA:acetate/3-ketoacid CoA transferase 
TIGRFAM ID[TIGR01110] malonate decarboxylase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.971648 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGTCG CAACAAGCGA AGTGGCCGGT GCTCGGTCCT GGGCAACACG CCGCGAAGGC 
AAACAGCGTC GCATGGCACT CGTCAGCCCA TGGATGAACG GCAAATTCCT GCCGCAAAAG
AAGATCGTCG AAGCGCTCGA GACCCTCTTG GTCCCCGGCG ATCGGGTGAT CATCGAAAGC
GTGCAGAAGC AGGCGGATTT TCTGTCCCGC TCGCTCGCCA AGGTGAACCC GAAGAAGATT
CATGACCTCA AGGCGGTGAT CTGGGCGATC GCGCGTCCCG ATCACATGGA GATCTTCGAG
CTCGGCATCG CCAGCGAAGT CGACTTCAGC TTCGCCGGTC CGCAGAGCCT GCGGTTGGCG
CAGATGCTCG ACGACGGCCA GATCAAGGTC AATTCGATCA ACACCTATGT CGAGCTGTCG
GCCCGGATGT TCGTCGATCT GATCCCGAAC GCGGTGCTGG TCTGCGCCGA CATGGCCGAC
CGCGAGGGCA ACCTCTACAC CGGTGCCAAC ACCGAAGACA CGCCGTCGAT GGTGGAAGCC
GCGGCGTTCC GCGACGGCAT CGTCATCGTC CAGGTCAACC AGATCGTCGA CAAGCTGCCG
CGCATCGACA TTCCGGGCGG CTGGATCGAC GTCATCGTCG AGGGCGATCG TCCCTACGCC
AAGGAGCCGA TCCAGACCCG CGACCCGAAG GACATCAAGG AGCTGCAGAT CCTCACCGCG
ATGATGGTGA TCCGCGGCGT CTACGAGCGG CATCAGGTGA CCTCGCTCAA CCACGGCGTC
GGCTTCGACA CCGCGGCGAT CGAGCTCTTG CTGCCGACCT ATGGCGGCAA GCTCGGGCTG
AAGGGCAAGA TCTGCCGCAA CTGGATTCTC AACCCGCAGC CGACCTTGAT CCCGGCGATC
GAGAGCGGTT GGGTCGAGAG CATCCACAGC TTCGGCAACG AAGACGGCAT GGAGAAGTAC
GTCGCGGCGC GCCCCGACAT CTACTTCACC GGTGCGGACG GCAGCCTGCG CTCCAATCGG
GTGTTCGCGC AGCTCGCCGG CCACTACGCG GTCGATTTGT TCGCGGGCTC GACCCTGCAG
ATCGACGCCC AGGGCAACTC CTCGACGGTC ACCAAAGGAC GTATTGCCGG CTTCGGCGGC
GCCCCCAACC TCGGCAGCGA CGCGCGCGGC CGCAGGCATC CGTCGGCCGC CTGGTTGTCG
CTGATCACCT CCGACGACGC CATCGTGCGC GGCCAAAAGC TCTGCGTGCA GGTGGTGGAG
ACCTTCAAGG CCGGCGGCGT GCCGCTGTTC GTCGAAACCC TCGACGCGGT CCAGGTCGGC
AAGGACGCCA AGCTGCCGAT CGCGCCGGTG ATGATCTACG GTGAAGACGT CACCCACGTC
GCCACCGAAG AAGGCATCGC CTACCTCTAC AAGGCAGACG GCATCGAAGA GCGCCGCGCC
GCGGTCGCAG CGGTCGCCGG CGTCACCAAG GTCGGCCTCA AGTCCACCGC CAAGCAGGTC
AAGGCGCTGC GCGAAAAGGG CGTGGTGGCT TATCCGGAAG ATCTCGGCGT GCGTCGCACC
GACGCCAACC GTTCGTTGCT GTCGGCGCGC AGCATGAAGG ATCTGGTGAC CTGGTCCGGT
GGACTTTACG AGCCGCCGGC ACGCTTCAGG AGCTGGTGA
 
Protein sequence
MDVATSEVAG ARSWATRREG KQRRMALVSP WMNGKFLPQK KIVEALETLL VPGDRVIIES 
VQKQADFLSR SLAKVNPKKI HDLKAVIWAI ARPDHMEIFE LGIASEVDFS FAGPQSLRLA
QMLDDGQIKV NSINTYVELS ARMFVDLIPN AVLVCADMAD REGNLYTGAN TEDTPSMVEA
AAFRDGIVIV QVNQIVDKLP RIDIPGGWID VIVEGDRPYA KEPIQTRDPK DIKELQILTA
MMVIRGVYER HQVTSLNHGV GFDTAAIELL LPTYGGKLGL KGKICRNWIL NPQPTLIPAI
ESGWVESIHS FGNEDGMEKY VAARPDIYFT GADGSLRSNR VFAQLAGHYA VDLFAGSTLQ
IDAQGNSSTV TKGRIAGFGG APNLGSDARG RRHPSAAWLS LITSDDAIVR GQKLCVQVVE
TFKAGGVPLF VETLDAVQVG KDAKLPIAPV MIYGEDVTHV ATEEGIAYLY KADGIEERRA
AVAAVAGVTK VGLKSTAKQV KALREKGVVA YPEDLGVRRT DANRSLLSAR SMKDLVTWSG
GLYEPPARFR SW