| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4573 |
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| Symbol | |
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| ID | 3971795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5103008 |
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| End bp | 5104447 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637927684 |
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| Product | hydrogenase 4 subunit D |
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| Protein accession | YP_534414 |
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| Protein GI | 90426044 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCCC TTGCGCTAGC AAGCATCCTA CTTCCCACCG TCGGAGCCGC TCTCATCGCG
CTCTCGCCGC GGTCGGCCTC GAAACGCCTC GGCCAGGTCT TCGCTGGCCT CGCCACCGCC
GTGCTGCTCG TGCTCGCCTA CCAGTTCGCC ATCGGCGGCA AGGTGGCGAG CGAATATTCG
GTAATCAACT TCGGCGGCGT CGAGATCCTC GGCTTCGGCG TCGACACCGT GTCGGTATTG
GTCGCCTGCG CGGTGGTCGG CATCGGCTTC CTGATCTCGA TCTACTCCGG CGGCTATCTC
GACGCCGGCA ATCGCGAGCA TCCGGATATC GTGCGGCGGC GCTACTTCGC CTTCCTTTCG
CTGTTCATCG GCGCGATGGC GGGCCTGGTG TTCTCCACCA CGGTGATCGG CCAGCTGGTG
TTCTTCGAAA TCAGCGGCGT CTGCTCCTGG GCGCTGATCG GTTACTACGA AAAGCCGAAG
TCGCTGTATT CCGCCGCCAA GGCGCTGATC ATCACCCATA TCGCCTCGCT CGGGCTGTAT
GTCGCGGCCA GCGTCATGTT CCTGGAGACG CACACGTTCG CGCTGTCGGC GATCGGCGGG
CTGTCGGACA GCGCCAAGAC CATCGTGCTG CTGGCGATTC TGGTCGCCGC CTGGGGCAAG
TCGGCGCAGC TGCCGTTCCA CATGTGGCTG CCCGACGCCA TGGAAGCGCC GACCCCGGTC
AGCGCCTACC TGCACGCCGC CTCGATGGTC AAAGTCGGCG TCTACATCTT CGCCCGCGCG
CTGATGTCGT CGAACGGCGC GCCGGAACTG GTCGGCTACG TCTGCACCAT CATGGCGACC
ATCACCCTGG TGTACGGCTT CATCATGTAT CTGCCGCAGT GTGACATGAA GCGGCTCTTG
GCCTACTCCA CCATCACCCA GCTCTCCTAC ATGTTCCTCG GTCTCGGGCT GTCGGTGTTC
GGTTCGCAGA TGGCCTTCAA CGGCGCCATC GCTCACTTGT TCAACCATGC CTTCGCCAAG
ACGCTGTTCT TCTTGGTCGC CGGCGCACTG AGTTACACCA CCGGAACGCG CATGTTGCCG
CTGTTGCGCG GCGTCCTGTC GAAATCGCCG TTGCTCGGCA TCGCCTTCGT GGTGGCGGCC
TTGGCGATCG CCGGCGTCCC GCCGTTCAAC GGCTTCTTCT CGAAGTTCGC GATCTTCGCC
GGCGGCTTTG AGGTCGCTCA ACAGCACCCC TTGCTGATGG TGCTGTTGGT GATCGCGTTG
CTTGAATCGG TCGGCAGCTT CGCCTGGTTC CTGAAATGGG TCGGTTGGAC AGTGCCGGGT
CGTCCGTCGG AGGCGGTGGC CGCAGCGTCC CCGGTTCCGC TCTCCATGCA GATCGTGCTG
ATCACGTTGA TCGTCATGGC GGTCTGCTCA AGCTTCATCG CCGCTAGCTG GCTCGGTTGA
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| Protein sequence | MIALALASIL LPTVGAALIA LSPRSASKRL GQVFAGLATA VLLVLAYQFA IGGKVASEYS
VINFGGVEIL GFGVDTVSVL VACAVVGIGF LISIYSGGYL DAGNREHPDI VRRRYFAFLS
LFIGAMAGLV FSTTVIGQLV FFEISGVCSW ALIGYYEKPK SLYSAAKALI ITHIASLGLY
VAASVMFLET HTFALSAIGG LSDSAKTIVL LAILVAAWGK SAQLPFHMWL PDAMEAPTPV
SAYLHAASMV KVGVYIFARA LMSSNGAPEL VGYVCTIMAT ITLVYGFIMY LPQCDMKRLL
AYSTITQLSY MFLGLGLSVF GSQMAFNGAI AHLFNHAFAK TLFFLVAGAL SYTTGTRMLP
LLRGVLSKSP LLGIAFVVAA LAIAGVPPFN GFFSKFAIFA GGFEVAQQHP LLMVLLVIAL
LESVGSFAWF LKWVGWTVPG RPSEAVAAAS PVPLSMQIVL ITLIVMAVCS SFIAASWLG
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