| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4520 |
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| Symbol | |
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| ID | 3972298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 5042746 |
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| End bp | 5045742 |
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| Gene Length | 2997 bp |
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| Protein Length | 998 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637927630 |
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| Product | conjugal transfer relaxase TraA |
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| Protein accession | YP_534361 |
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| Protein GI | 90425991 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.26216 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATCT ATCATCTTCA CGTCAAAGTC ATTGGCCGCA AATCCGGCTC CAGCGTGGTG
GCGGCGGCCG CCTACCGCTC GGGCTCGCGG TTGCGCGACG AGCGCCTCGA TCGCAGCCAT
GACTTCTCCG CCAAGCGCGG CGTCGTTCAT TCGGAGGTGA TGCTGCCGGA AAATGCGCCG
CAGGCATGGA GCGACCGTGA GCGCCTCTGG AACGATGTCG AGGCCTTCGA GATCCGCAAG
GATGCGCAGC TTGCCCGCGA GGTGGAGTTC GCCATTCCGC GCGAGATGAC GCAGGCGCAG
GGCATCGAAC TGGCCCGCGA CTTCGCGCAG TCGGAGTTCG TGGGTCGGGG CATGATCGCC
GATCTCAATG TGCATTGGGA TATCGGCAAG GACGGCATGC CCAAACCTCA TGCCCATGTC
ATGCTGACGA TGCGGTCAGT TGACGAGAAT GGCTTCGGCC CCAAGGTGCG GGCTTGGAAC
CGCACGCAGA TGGTCGAGCG CTGGCGCGAA CGTTGGGCTG AGCTTGCCAA CGAACGTCTG
GCTGAGCTCG ACATCGACGC ACACATCGAC CATCGCAACT TTGAGGCGCA GGGCATCGGG
CTGGAGCCGC AAAGCCAGAT CGGCGCCTCC GCGCAGCGCA TCGAAGGCGA AGGGGTCGAG
GCCGCCGACC GCGCCGAGAT GCACCGCGAG ATCGCGCGAA ACAACGGCGA AAGGATCATC
GCCGATCCTT CCATCGCACT GGACGCGATC ACGCATCAGC AATCGACCTT CACGCCGCGC
GACATGGCGA AGTTCGCGCA CCGGCACAGC GACGGGATTG ACCAGTTCAA CGCCGTGATG
GGCGCGATGC GCGGCGCGCC CGATCTGGTC GAACTCGGAC AGGACGCTCG CGGCGAGGAC
CGCTTCACCA CCCGCGACAT GATCCAAACC GAACAGCGGC TGCACCGCGC GGCCCAACTC
ATGGCCGAGC GGGAACGCCA TGCCGTGGAG GACGCAGATC GCGAAGCTGC CTTGGCTCGC
GCCGAACAGC GCGGCCTTGT CCTGTCCGGC GAGCAGGCCG ATGCGCTGGC GCATGTCACG
GACGGGCGCG ATCTTGGGAT CGTGGTTGGC CATGCCGGAA CTGGCAAGAG CGCGATGCTG
GGCGTGGCGC GGGAGGCATG GGAGGCGGCG GGTTACGAGG TCCGGGGCGC GGCGTTGTCC
GGCATTGCCG CCGAGAATCT GGAGAGCGGA TCGGGCATTG CGTCACGCAC CATCGCCAGC
ATGGAACATG GCTGGGGCCA AGGCCGCGAC CTGCTCAGCG CGCGCGATGT GTTGGTGATC
GACGAGGCCG GCATGGTCGG CACGCGGCAA TTGGAGCGCG TGCTGTCCCA TGCTGCCGAG
GCCGGCGCCA AGGTCGTGCT GGTCGGCGAT CCGCAACAGT TGCAAGCAAT AGAAGCCGGC
GCGGCGTTTC GGTCGATCCA TGAGCGCCAC GGCGGCGTCG CGATCGGCGA GGTGCGCCGC
CAACGCGAGG ATTGGCAGCG CGACGCCACG CGCGACCTGG CGACCGGCAA GACCGGCGCA
GCGATCCAAG CCTATGCGAG AGGCGGCATG GTGCATGTGG CGGCTTCCCG CGAGCAGGCG
CGCGTCGATC TGATCGACCG CTGGGATCGC GACCGACAGG CATCGCCGGA CCACAGCCGC
ATTATCCTCA CCCACACCAA TGACGAGGTT CATGCGCTCA ACGCCGCCGC GCGGGAACGG
ATGCGGGCGG CGGGCGATCT GGGCGAGGAT GTACGTGTCA CGGTCGAACG CGGCGCGCGC
AGCTTCGCCA GCGGGGACCG CATCATGTTC CTGCAAAACG AGCGCAGTCT CGGCGTGAAG
AACGGCACAC TCGGCACCAT CGAACGGGTC AGCGCGCTGT CCATGTCGGC GCGCATTGAC
GATGGCCGTT CCGTTGAATT CGACCTGAAG GATTACAACC GCATCGACCA CGGCTATGCC
GCGACCATCC ACAAGGCGCA GGGCATGACG GTGGACCGGA CCCATGTGCT GGCGACGCCG
GGCATGGACG CCCATAGCAG CTATGTCGCG CTGTCGCGGC ATCGCGACGG CACCGACTTG
CATTATGGCC GTGAGGACTT CGCCGGTCAG GACCGGCTGG TTCGCACCCT GTCGCGCGAC
CGGGCCAAGG ACATGGCGTC GGATTACGAT CGCGCCGATC CGGTGCAGCG CTACGCCGAG
CGGCGCGGCA TCACTTTCCG CGAGCGTGTC GCCGAAATCG TCCAGAAAAT CGTGCCGGAG
AAGCTGCGCG GTATGTTTGA CGGCCTGCGC TTTCCTGGAG ATGTGCCCGG CCACGATGGT
GGACGGAGGC CGGAGCGGGA AACGCCGGAA AGGGAAAGCG CCACGGCGGC GGTCCGGCGA
AGGACGGATG CGCCGGAAAG GACCGTGGCA GCGGACACGG ACGTGGCACT GCGTCAAGCT
CGCACCAAGG CGCTCATCCG CCACGCCCGC GCCGTGAATG CGATCTTCGA GATGCAGCAG
CAGGGCGGCA AGGCCAGCTC GGAGCAGGTG AAGGAATTGC AGGAGGCCCG CAAGGAATTC
GAGGGGGTAC GGCCTTATGG CTCGCACGAC GCTGAAGCCG CCTACAAGAC GAACCCGGAA
CTCGTAGAGC TAGCCGCTTC GGGCAATCCC GCCCGCGCGA TCCGCGCCCT CCAACTTGAA
ACCGAGCTGC GCACCGACCC CGCCCGGCGC GCCGACCGCT TCGTAGAGCG TTGGCAGAAG
CTCGACCGGA CCAGCCAGCG CCAGTATCAG GCGGGCGACA TGTCGGGCTA CAAATCCACG
CGAGCGGCCA TGGGCTCCAT GGCCAAGAGC TTAGAGCGCG ATCCGCAGCT TGAATCCATT
CTAGCAGGCC GCAAGCAGCA GCTCGGCATC GCGTTCGAAA CAGGCCGCCG GCTCGGCCAG
GAATTGGCAT TCACCCACGG CATCGATCTC GGCAAAGGCC GGGGCATCGG GCTCTGA
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| Protein sequence | MAIYHLHVKV IGRKSGSSVV AAAAYRSGSR LRDERLDRSH DFSAKRGVVH SEVMLPENAP
QAWSDRERLW NDVEAFEIRK DAQLAREVEF AIPREMTQAQ GIELARDFAQ SEFVGRGMIA
DLNVHWDIGK DGMPKPHAHV MLTMRSVDEN GFGPKVRAWN RTQMVERWRE RWAELANERL
AELDIDAHID HRNFEAQGIG LEPQSQIGAS AQRIEGEGVE AADRAEMHRE IARNNGERII
ADPSIALDAI THQQSTFTPR DMAKFAHRHS DGIDQFNAVM GAMRGAPDLV ELGQDARGED
RFTTRDMIQT EQRLHRAAQL MAERERHAVE DADREAALAR AEQRGLVLSG EQADALAHVT
DGRDLGIVVG HAGTGKSAML GVAREAWEAA GYEVRGAALS GIAAENLESG SGIASRTIAS
MEHGWGQGRD LLSARDVLVI DEAGMVGTRQ LERVLSHAAE AGAKVVLVGD PQQLQAIEAG
AAFRSIHERH GGVAIGEVRR QREDWQRDAT RDLATGKTGA AIQAYARGGM VHVAASREQA
RVDLIDRWDR DRQASPDHSR IILTHTNDEV HALNAAARER MRAAGDLGED VRVTVERGAR
SFASGDRIMF LQNERSLGVK NGTLGTIERV SALSMSARID DGRSVEFDLK DYNRIDHGYA
ATIHKAQGMT VDRTHVLATP GMDAHSSYVA LSRHRDGTDL HYGREDFAGQ DRLVRTLSRD
RAKDMASDYD RADPVQRYAE RRGITFRERV AEIVQKIVPE KLRGMFDGLR FPGDVPGHDG
GRRPERETPE RESATAAVRR RTDAPERTVA ADTDVALRQA RTKALIRHAR AVNAIFEMQQ
QGGKASSEQV KELQEARKEF EGVRPYGSHD AEAAYKTNPE LVELAASGNP ARAIRALQLE
TELRTDPARR ADRFVERWQK LDRTSQRQYQ AGDMSGYKST RAAMGSMAKS LERDPQLESI
LAGRKQQLGI AFETGRRLGQ ELAFTHGIDL GKGRGIGL
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