Gene RPC_4515 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4515 
Symbol 
ID3972293 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp5038768 
End bp5040432 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content62% 
IMG OID637927626 
Productmethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
Protein accessionYP_534357 
Protein GI90425987 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein
[COG2202] FOG: PAS/PAC domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.328844 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTCGGGT TTAACAGCAA GAGAGTGAAG CACGCGCTGG CGGAGGTCGA GGCACTCGAC 
CGCTTGCAGG CTGTCATCGA ATTCGACCTC GATGGTACCA TCCTGAACGC CAACGAGAAC
CTCCTGAAGA TGAGCGGCTA CACGCTCGCG GAGATCAAGG GCAAGCATCA CAGCATCTTC
GTCAGCCCGG CCGAGCGCGA GAGCGCCCGC TATCGCGACT TTTGGAAGAG CCTGAACCGC
GGCGAATTCC AGACCACCCA ATACAAGCGC TTCGGCAAAG ACGGCAAGGA AGTCTGGGTC
CACGCCTCCT ATGCGCCGCT GCGCGACGAG ACCGGCAAGG TCGTCAGCTT CATCAAGTTC
GCGACCGACA TCACGGCGTA CAAGCTTAGG ACCATGGAGG ACGCCGGCAA GATTGCCGCG
ATCAACCGTG CCCAGGCTGT GATCGAGTTC GAGATGGACG GCACCGTCAT CACCGCCAAC
GAGAATTTCC TGGGCGTGAT GGGCTATTCG CTCGCCGAGA TTCAAGGCAA GCACCACAGC
ATGTTCGTGA CGGTCGAGGA TCGCGCGAGC GCCGGCTATG CCGAATTCTG GGCGCGGCTC
AACCGCGGTG AGTTCATGGC CGCCGAATAC AAACGGATCG CAAAGGGCGG CGGCGAAATC
TGGATTCTCG CGACCTACAA CCCGATCCTC GACGAGACCG GCAAGCCGCT AAAGGTGGTG
AAGTTCGCAA CGGACGTCAC CGCGCAGAAG ATGAAGGCGG CGGACAGCGA CGGCCAGCTC
GCCGCGATCC AGAAGTCGCA GGCCGTGATC GAGTTCAACA TGGACGGCAC GATCCGTACA
GCGAACCAGA ACTTTTTGAA TGCGATGGGT TATTCGCTCG CGGAGATCAA GGGCCAACAC
CACAGCATGT TCGTCGAGCT ACGCGATAAG AACTCGGCCG CCTACCGCCA ATTCTGGGAA
GCGCTCAATC GCGGCGAATA CCAGGCCGCC GAATACAAAC GGATCGCCAA GGGCGGCCGG
GAGATATGGA TCCAGGCCTC CTACAATCCG ATCTTGGATC TCAACGGAAA GCCCTACAAG
GTGGTGAAGT ACGCCACCGA CATCACCGCG CAAGCGATCG GCCGCAAGAA GGCGGACAAT
GCGCGTGGGC TCATCGAGGC GGTTGCGGCC GGCAGCGAGC AGATGAGCGC ATCGATTCGC
GAGATCTCCG AAACCATGGC GAAGTCGCGC GAGACCTCGA AGGGCGCGAC CGCCCGGGTC
GACGCTGCCG ACGGCCAAGC GCAAAGGCTG AACGCGGCCG CGCAGGCGAT GAGCGGCATC
GTCGAGATGA TCGCCGGCAT TACCAGCCAG ATCAATTTGC TCGCGCTCAA CGCCACGATC
GAATCCGCGC GCGCGGGCGA ATCCGGTCGC GGCTTTGCGG TGGTCGCCTC CGAGGTGAAA
AACCTCGCCG GTCAGGCCAA GCAGGCGACC GACACGATTA CGGCGGAAAT CGAAGCGCTG
AACGCCGTCT CCAGCGGAGT CGCGAGCTCG CTGACCGCGA TCAAGGCCGC GATCGCCGAT
GTCAACGAAT TCATCGCCTC CACCGCCGCA GCGGTCGAGG AACAGAGCGC AGTGACGGCG
GACATGTCGG CCAACATGCA GCGCGCATCG GCGGAACTGG CTTAG
 
Protein sequence
MFGFNSKRVK HALAEVEALD RLQAVIEFDL DGTILNANEN LLKMSGYTLA EIKGKHHSIF 
VSPAERESAR YRDFWKSLNR GEFQTTQYKR FGKDGKEVWV HASYAPLRDE TGKVVSFIKF
ATDITAYKLR TMEDAGKIAA INRAQAVIEF EMDGTVITAN ENFLGVMGYS LAEIQGKHHS
MFVTVEDRAS AGYAEFWARL NRGEFMAAEY KRIAKGGGEI WILATYNPIL DETGKPLKVV
KFATDVTAQK MKAADSDGQL AAIQKSQAVI EFNMDGTIRT ANQNFLNAMG YSLAEIKGQH
HSMFVELRDK NSAAYRQFWE ALNRGEYQAA EYKRIAKGGR EIWIQASYNP ILDLNGKPYK
VVKYATDITA QAIGRKKADN ARGLIEAVAA GSEQMSASIR EISETMAKSR ETSKGATARV
DAADGQAQRL NAAAQAMSGI VEMIAGITSQ INLLALNATI ESARAGESGR GFAVVASEVK
NLAGQAKQAT DTITAEIEAL NAVSSGVASS LTAIKAAIAD VNEFIASTAA AVEEQSAVTA
DMSANMQRAS AELA