Gene RPC_4478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4478 
Symbol 
ID3972490 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp4980943 
End bp4982607 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content66% 
IMG OID637927589 
Productradical SAM family protein 
Protein accessionYP_534320 
Protein GI90425950 
COG category[C] Energy production and conversion 
COG ID[COG1032] Fe-S oxidoreductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.140837 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.22726 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGGGGA GCGTCACTGC CGGTTTCGGC AAGGCGGAGC CGCGGCCGCA GGTCGGGGCC 
GCACAGCCGC TGAAAATCCT GTTCCTGCAT CCGAAGACGC TGGTGGATTC CTGGCCGGTC
CCGATCGACA CGTTGGGCGA AATCGTCAAG TTTCCCAGCG CGGTCTATCC GGTGCTCGCC
GCCACCATCA AGGATCTCGC GGTCGAGACA AAATTCCTCG ACGGCTATGT GGCGCGGATC
TCGCTGCCGG AGTATCGCGC GCGGCTGCGC TGGGCCGACG TGATCGCGAT TTCCTGCATG
TCGCCGCTGA AGGCGCTCGA TACCGAACTC ACCATCAAGC TGGCGCGCGA GGTCAATCCC
GCGGTGAAAA TCGTGGTCGG CGGCAATCAC GCCACCGCCT GGCCGGACCG TTGGATCGAC
GCCGGTGTCG ATTTCGTGGT GACCGGCGAA GGCGAAGCCG CGTTCCGGGC GCTGATCGAG
GCGCTGATCG TCGGGGCTGC TGCGTTCGAC GCCGTCCCCA ACCTGTGCTG GCGCGACGGC
GACGTGTGCC GGCGCTCGCC GCTGAAGGCC GAGCCGACCG ACCTCGAAGC CGCGCCGATG
CCGGACTGGA GCGGTTTTGA CCTGCGGCCT TATGGCCTGG GCATGAGCAA TGGGTTCGGC
GCCGCGGTGG AGATTTCCCG CGGCTGCCCG CATCGCTGCG ATTTCTGCAA CATCAACACC
TTCTGGAACT ACAAGCAGCG CTACAAGTCG GTCGACAAGG TGATCGCCGA ACTGCAGGCG
CTGAAAGCGG CCGGCGTCGG CGAGTTCATC TTCACCGACG ACAATTTCGG CGGCGACGAG
CGCAAGACCG TGGCGCTGCT CAAGGAGATG ATCGCCCACC GGCTCGATTT GCGGTTCGGC
TGTTTCCTGC GCGGCGACAC CGTGCATCGC AACCCGGATT TCGCCCGCCT CGCGCACCAG
GCCGGGATGC GGTTCTGCAT GATGGGAATC GAAACCCTCG ATGCCGAATG GCTGAAGAGC
CATCGCAAGG GCGTGCGCGC CCATGATGCG ATCGCCATGT ACAACAAGAT CTACCGGACG
CTGCGGGCGC AGGGCATCTT CGTGGTCGGG CTGTTCATCA TCCCGGCACA ACGCGGCAAG
GCGCGCTACG TCAAGCCGAC CGGGATCGTC TGCGACTATC AGTTCACCGC CGACCTGGTG
GCGCTGCGCG GCAGCGCCCT GTTCGCGCAG CACGCCGAGG CCGACACCGT CTCCAAGGAC
ATGTTCTACC ACGACTGGAA CCTGTCGAGC ATCCTGGTCG ACGACCGCGC CGAGCAGCGC
AGCGGCAAGT CGTTCTTCCA CACCGTGCGC GAGAACCTGT CGTTTCATGC GTTGCGCCAA
GCCTTTGCCG GCTCGCCGGT GGCGCGGCGG TTTCGCTGGC GGCCGCTCTG GATTCTGCTC
GAGCGCGCCA TCTGCACCAC ACGCGCCGAC GTCAAACGTT ACCGGGTGGC GCGTTCGAAA
GCTTTGACCA TGCAGCAGAA GCAGGACTAC GCTGTCGGCA GCGTGCTCGA TCCGGCGCAC
ATCGCCCGCC TGGCGCGCCG ACGAGCGGTG TTGACACCGC TCGGACTGCG CACCAGCCTG
TGGACCCGCG CGCATCATAG CCACAGCATC GCGGCCAGAG ACTAA
 
Protein sequence
MGGSVTAGFG KAEPRPQVGA AQPLKILFLH PKTLVDSWPV PIDTLGEIVK FPSAVYPVLA 
ATIKDLAVET KFLDGYVARI SLPEYRARLR WADVIAISCM SPLKALDTEL TIKLAREVNP
AVKIVVGGNH ATAWPDRWID AGVDFVVTGE GEAAFRALIE ALIVGAAAFD AVPNLCWRDG
DVCRRSPLKA EPTDLEAAPM PDWSGFDLRP YGLGMSNGFG AAVEISRGCP HRCDFCNINT
FWNYKQRYKS VDKVIAELQA LKAAGVGEFI FTDDNFGGDE RKTVALLKEM IAHRLDLRFG
CFLRGDTVHR NPDFARLAHQ AGMRFCMMGI ETLDAEWLKS HRKGVRAHDA IAMYNKIYRT
LRAQGIFVVG LFIIPAQRGK ARYVKPTGIV CDYQFTADLV ALRGSALFAQ HAEADTVSKD
MFYHDWNLSS ILVDDRAEQR SGKSFFHTVR ENLSFHALRQ AFAGSPVARR FRWRPLWILL
ERAICTTRAD VKRYRVARSK ALTMQQKQDY AVGSVLDPAH IARLARRRAV LTPLGLRTSL
WTRAHHSHSI AARD