| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4475 |
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| Symbol | |
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| ID | 3972487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4976682 |
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| End bp | 4978424 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637927586 |
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| Product | transcriptional regulator NifA |
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| Protein accession | YP_534317 |
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| Protein GI | 90425947 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.391339 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCTATC GCGAAGCGCA CGTCGCCGAT GCCGAGGAAT CGCGCCCGAC CACTCTGATA
CCTCTGAGCG AAATTGCTCT GACTGGTATC TTTGAGATCT CGAAGATCCT CACCGCGCCG
GCGCGTCTCG AAACCACGCT CGCCAATGTC GTCAATCTGC TGCAGTCGTT CATGCAGATG
CGGCATGGCA CGGTGTCGCT GCTGGCCGAC GATGGGGTGC CTGATATTAC CGTCGGCGCC
GGCTGGAACG AAGGCACCGA CGACCGCTAC CGCGCCCGCC TGCCGGCCAA GGCGATCGAC
CAGATCGTCG CGACCTCGGT GCCGCTGGTG GTCGAGAACG TTTCTTCGCA TCCGATGTTT
TCGCGCGCCG ATGCCGACGC GCTCGGGGCC TCGCCCGAGG TCCGCGTTTC GTTCATCGGC
GTGCCGATCC GGATCGATTC CCGGGTGGTC GGTACGCTGA CCATCGACCG CGTCCGCGAC
GGCCGCTCGA TCTTCCGGCT CGACGCCGAC GTCCGCTTCC TCACCATGAT CGCCAATCTG
ATCGGCCAGA CCGTCAAGCT GCACCGCGTG GTGGCGCGCG ACCGCGAGCG GCTGATGGCC
GAGAGCCACC GGCTGCAGAA GCAATTGTCC GAGCTGAAAC CGCCGCGCGA GCGCAAGAAG
GTCCGCGTCG ACGGCATCAT CGGCGAAAGC CAGGCGATCC GCGGGCTGCT CGCCAAGGTC
GGCATCATCG CCAAATCGCA TTCGCCGGTG CTGCTGCGCG GCGAGTCCGG CACCGGCAAG
GAGCTGATCG CCAAGGCGAT CCACGAATTG TCGTCGCGCG CCAACGGCCC GTTCATCAAG
ATCAACTGCG CGGCGTTGCC CGAATCGGTG CTGGAATCCG AATTGTTCGG CCACGAGAAG
GGCGCCTTCA CCGGCGCCAT CGCGTCGCGC AAGGGACGCT TCGAACTCGC CGACAAGGGC
ACGCTGTTCC TCGACGAGAT CGGCGAAATC TCGCCGTCGT TCCAGGCCAA GCTGTTGCGG
GTGTTGCAAG AGCAGGAGTT CGAGCGGGTC GGCGGCAACC ACACCATCAA GGTCAATGTC
CGCGTGGTGG CGGCCACCAA CCGCAATCTC GAGGAGGCGG TGGCGCGCAA CGAATTCCGC
GCCGACCTGT ACTATCGCAT CAATGTGGTG CCGATGATGC TGCCGCCGCT GCGTGATCGC
GCCAGCGACA TTCCGCTGTT GGCCAGCGAG TTCCTGAAGA ACTTCAACAG GGAAAACGAG
CGCGACCTGG AGTTCGATCC GGCCTCGATG GAGCTGCTGC AGGGGTGTTC GTTCCCCGGC
AACGTGCGCG AGCTGGAAAA CTGCGTGCGC CGCACCGCGA CGCTGGCGCC CGGTCCGGCG
ATTCACCAGG ACGACTTCGC CTGCCATCAT GACGAGTGCC TGTCGTCGAT TCTTTGGAAG
AGCCATTCGG AGCGCACCGC GCAGCGTCCG CCGCCGGAAA TTCCGCTTGC AGTCGCACCG
ATCGGCCGGG CCGACGGCCC CCGCGGCAAC GTTGCAGCAC CGGCGCCCAC CGTGCCGACG
CCGCAGCCGC CCGCCCGCGT CGAAGCGGCC TCCGACGCGC AGATGTCCGA GCGCGAGCGG
CTGGTCGACG CCATGGAACG CTCGGGCTGG GTGCAGGCCA AGGCGGCGCG CATCCTCGGG
CTGACGCCGC GGCAGATCGG CTACGCGCTG AAGAAGTACG ACATCGAGGT CAAGCACTTC
TGA
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| Protein sequence | MVYREAHVAD AEESRPTTLI PLSEIALTGI FEISKILTAP ARLETTLANV VNLLQSFMQM
RHGTVSLLAD DGVPDITVGA GWNEGTDDRY RARLPAKAID QIVATSVPLV VENVSSHPMF
SRADADALGA SPEVRVSFIG VPIRIDSRVV GTLTIDRVRD GRSIFRLDAD VRFLTMIANL
IGQTVKLHRV VARDRERLMA ESHRLQKQLS ELKPPRERKK VRVDGIIGES QAIRGLLAKV
GIIAKSHSPV LLRGESGTGK ELIAKAIHEL SSRANGPFIK INCAALPESV LESELFGHEK
GAFTGAIASR KGRFELADKG TLFLDEIGEI SPSFQAKLLR VLQEQEFERV GGNHTIKVNV
RVVAATNRNL EEAVARNEFR ADLYYRINVV PMMLPPLRDR ASDIPLLASE FLKNFNRENE
RDLEFDPASM ELLQGCSFPG NVRELENCVR RTATLAPGPA IHQDDFACHH DECLSSILWK
SHSERTAQRP PPEIPLAVAP IGRADGPRGN VAAPAPTVPT PQPPARVEAA SDAQMSERER
LVDAMERSGW VQAKAARILG LTPRQIGYAL KKYDIEVKHF
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