| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4382 |
|---|
| Symbol | |
|---|
| ID | 3970436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4887993 |
|---|
| End bp | 4888904 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637927491 |
|---|
| Product | dihydrodipicolinate synthetase |
|---|
| Protein accession | YP_534224 |
|---|
| Protein GI | 90425854 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0524626 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTTC CCCTGCTTCG CGGCGTCATC CCGCCAGTCC CCACCATTCT GCATGACGAC
GGCACTTTCG ATTCGGTAGG CATGGGGCGT GTGATTGACC GATTGCTGGA GAGCGACGTC
AACGGCTTCC TGTTCCTGGG CAGCGCGGGG GAATTCGCCC ATCTGACCAC GGTGCAGCGC
AAGGCGATCG CCGAGTTCTG CATTGCGCGG GTCGCGGGTC GCAAGCCGGT GATCATCGGC
ACCGCCGCCT GCGGCACCCT CGAGGCGATC GAACTCGGTC AGCACGCCGC CGCCGCCGGC
GCCGATGCGG TGATCGTGGT CAATCCCTAC TACGCGCGGC TGACCGAGGA ACGGATCTAC
CTGCACTACC GAAGCATCGC GGAAGCGGTG CCGGTGCCGG TGCTGCTCTA CAATTTCCCG
GCCCTGACCG GCGAGGATCT GTCGATCGAG TTGGTCGGCC GGCTGGCGCG CGACTGCCCC
AACATCGTCG GCATCAAGGA CACCGTCGAC TGCCTCAGCC ACATCCGTCG GCTGATCACC
GAGGTGAAGA GCGTTCGGCC GGACTTCCTG GTGTTCTGCG GCTTCGACGA ATACGTGCTC
GACACCTTGA TGCTCGGCGG CGACGGGGTG ATCCCGGCGA CCTCGAATTT CGCCCCGGAA
GTGACCTGCG GCATCTACGC CGCCTTCAAC CGCGGCGACT TTGCCGCGCT GGGCCCGCTG
ATGCGCCGGC TCGCGGTGCT GTGCCAGATC TACATCACCG ACGTTCCGTT CACCGGTCTG
GTGAAGGAAG CCCTCGTCAA GACCGGGCTC GACATCTCGA CCGCGGTCGC GGCCCCCGCG
ACACGCCCCG ATGCTGCCAC CTGCGCGCGC CTGGACGAGA TCCTGATCTC GGCCGGCGTC
ATCGCCGCCT GA
|
|---|
| Protein sequence | MPLPLLRGVI PPVPTILHDD GTFDSVGMGR VIDRLLESDV NGFLFLGSAG EFAHLTTVQR
KAIAEFCIAR VAGRKPVIIG TAACGTLEAI ELGQHAAAAG ADAVIVVNPY YARLTEERIY
LHYRSIAEAV PVPVLLYNFP ALTGEDLSIE LVGRLARDCP NIVGIKDTVD CLSHIRRLIT
EVKSVRPDFL VFCGFDEYVL DTLMLGGDGV IPATSNFAPE VTCGIYAAFN RGDFAALGPL
MRRLAVLCQI YITDVPFTGL VKEALVKTGL DISTAVAAPA TRPDAATCAR LDEILISAGV
IAA
|
|---|
| |