Gene RPC_4318 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4318 
Symbol 
ID3971506 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp4817300 
End bp4818163 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content71% 
IMG OID637927427 
ProductmodD protein 
Protein accessionYP_534160 
Protein GI90425790 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0157] Nicotinate-nucleotide pyrophosphorylase 
TIGRFAM ID[TIGR01334] putative molybdenum utilization protein ModD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0022213 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0469871 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCCATT CCCTGTCGAC CGCAGCCAGC CGCGCCGAAC TCGAGCGCCT CTTGGCCGAT 
GACGTGCCCT ATGGCGACCT CACCACCGAG GCGCTCGGCA TCGGCGCCGC TTTCGGCCGC
ATGACATTTT CGGCGCGCGA TCCGATGCTG CTGGCGCTCG CCGAAGACGC CGCCGCGATC
ATCGAACTGG CCGGCGGCCG GGTCGAACTT TTTGCCGCGT CGGGCACAAG GCTGGCGCCC
GGCGCGCCGA TCCTCGCCGC GCAGGGGCTG GCCTCGGCGC TGCTGAAAGG CTGGAAGGTG
GCGCAGACCC TGATCGAGAT CTGGTCCGGC GTCGCCAGCT CCGCGCGCGA CATCGTCGAT
GCCGCAACAG CGGTCTCGCC CGGCATCGTG GTCGCCTGCA CCCGCAAGAA TACCCCCGGC
ACCAAGCGCT TCGCGGTGGC GGCGGTGAAG GCCGGCGGCG CGGTGATGCA TCGGCTGGGG
CTGTCGGAAA CGCTGCTGGT GTTCGCCGAA CATCGCGGCT TTCTCGGCGA CGAGCCGCTG
GCCGCAACCG CGGCGCGGCT GCGGCGCGGC GCGCCGGAAA AGAAAGTGGT GATCGAAGTC
GGCTCGGTGG AGGCCGGCGT GGCGGCGGCC GAAGCCGGCT TCGACGTGAT CCAGGCGGAG
AAATTCGCGC CATCGGACAT CGCAGCGCTG CTGGCCCGGC TGGCCGCAAT GCCGCGCCGG
CCGGTGATCG CCGCCGCCGG CGGCGTCAAT CCCGGCAATG CCGCGGCCTA TGCGCAGGCC
GGCGCCGATC TGTTGGTGAC CTCCGCGCCC TATCTGGCGA AGCCGCGCGA CGTCCAGGTG
CGCATCGCGC CATTGCCGCG ATGA
 
Protein sequence
MSHSLSTAAS RAELERLLAD DVPYGDLTTE ALGIGAAFGR MTFSARDPML LALAEDAAAI 
IELAGGRVEL FAASGTRLAP GAPILAAQGL ASALLKGWKV AQTLIEIWSG VASSARDIVD
AATAVSPGIV VACTRKNTPG TKRFAVAAVK AGGAVMHRLG LSETLLVFAE HRGFLGDEPL
AATAARLRRG APEKKVVIEV GSVEAGVAAA EAGFDVIQAE KFAPSDIAAL LARLAAMPRR
PVIAAAGGVN PGNAAAYAQA GADLLVTSAP YLAKPRDVQV RIAPLPR