Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4308 |
Symbol | |
ID | 3973910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 4808148 |
End bp | 4810256 |
Gene Length | 2109 bp |
Protein Length | 702 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637927417 |
Product | hypothetical protein |
Protein accession | YP_534150 |
Protein GI | 90425780 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0554257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0504363 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAATAT CGCGACTGAC GGTCGATAAG CTCGGCGTCA AGTTGTATGA CCGCGCCTCA GCAGTTATTG CCGAACTCGT TTCCAACTCA TACGACGCAG ACGCCACTGA AGTGCGGATC AGTGCACCGA TGGGCCAATA CCTTGCTTCA AAGGCCGGCG GTCAGATCAT TGACAAAGGT TTTGAGATCA TCGTGCAAGA CAATGGTCTT GGTATGGACC CTAGGGGCAT GCAGGAGTTC TTTCTCGTCG TTGGCAGCGA CCGACGCTTA GACGCAAAGC GCGGAGACAC CTCCAAACTG TATGGCCGAA AAGTCATGGG CAGGAAAGGA GTCGGCAAGC TTGCGCCGTT CGGTATCTGC AAAACCTTGG AAGTGATTAG CTCAGGCGGC GAGAAGGTTG TTCGTCGCCA AGCAGGAGGC AATACCGAGA CGGGATATCT CACATCGCAT ATTTTACTCG ACTACGACGA CATCGTTGGC GACGACGACG GCGACTACCA ACCGACCGTG GGATCGCTGG ACAATAGCGT TCAGCCCTCT CGCGGAACCA CGATTAAACT GTCTCGGTTT AGCTATCGAC GAGTTCCCGA AATCGAGCAT CTCTCCCGCC AAGTCGCTCA GCGATTTGGT ATTCGGTCAG ACAAATGGAA GGTGCTGCTT CGAGATTCCA CGATGACGGA TGGCGCCAAT GGCTCCGAAG TCAGCGTTGG AGAGTTCGAC ATAAATGTCA TGGAAGGCAC TCGTATAGAG TTCATGGGGC CCGACGGGCC GACAGTCTCA ACGGTTTCGG CTGATGGTTA TCAGGCGCGA ACACCGATCG GCGATCTTAT AACAAGTTTC AACGCGGGCT TCTCGCACGA CGGAAGATTT TACCCTGTCA AAGGGTGGGT TGCATATGCG CGCGAATCTT ATCGCGACGA TCTCATGGCT GGAGTTCGTA TTTATTGTCG TCACAAGATT GCAGCCCAAA CGGCTTTGTT CAATCGAGGG GCAGGTTTTC ACGGAGAGCA CAGCGTCCGC TCATACTTCA TCGGCGAGTT ATCGTGCGAC TGGCTTGATG AATACGAAGA TCTCATCCAG ACGGATCGCC GCGACATTTT ATGGTCGCAT GATTTAGGAC AAGCATTTCA AGAATGGGGG CAATCGCTCG TTCTGGAAGT GGGAAAGCGT GCCCGCGACC CCATGCGGAA GAAAACCCGC GAAGTCTTTC GGGAAGTTGG TCGAGTTGAA GAGCGAGTGA ACGCCGCTTT TCCCCGCCCA GAGCAACGAG ATCTCCGTGA GAAGGCCACC GAGATTGCGG AGATGCTCGG CAAGAGTTTG CGTGAAGATG AAGTGGGGGA TTTCGATATT GTCGGACCAC TCGTAACGCT CAGTATTGAT CTCGCTCCTC ACATAAGCCT TGAGCGGAAA CTTCGTGAGG CCGCGGAAGC GGAGAATACA CCAGCGGCAG TCATCGGCAG CATTCTGCGA ACGGCGCATC TTGCGGAGTT GCATTCTTTC GGCCGCATCG CTTACGATCG GGTTCGCGTC ATTGAACGCT TGAAGTCTCT GAAAGACGAT CCAAAAACTG TTGAGGAGGA GCTTCAAGAA CTCATTGAAA ATGCTCCTTG GCTTATCAAT CCAGAGTGGG CACCAATCAC AGCCAACCAG GCCCTCAGAA CGCTCAAGAT CGAATTCGAA GAATACTATC GTCTGCGAAC TGGGCAGTCG ATCACGCTCA GGGATTTTGC GGAAACGCAG AAGCGGCCTG ACTTTGTTGC GTTTGCCGTC GGTCAACAGT TGGAGGTCGT GGAAATCAAG CGCCCGTTCC ACAAGCTCAT GAATGACGAG ATGGAGCGAA TTAATCGATA CTACACCGAA ATGCGCGATT TTCTGGACGA TCCCGGACAC GCGGCGTTCA AGAAGGAATT TCAAGATTTC AGGATAACTC TTGTGTGCGA CGGGCTATCG CTGAGCGGCA TGGCCAAGAC GGCGTTCGAA GGTATCACTA AGGAGGGGCG CCTTGAGCAT GTGAAATGGC GCGATTTTTT GCTGCGGACC GAAATGAGTC ATAAACAATT CCTCGAAGAA GCCGAAAGAC AGAAACGTGA TGCGGCGCAA AGAGACTAA
|
Protein sequence | MKISRLTVDK LGVKLYDRAS AVIAELVSNS YDADATEVRI SAPMGQYLAS KAGGQIIDKG FEIIVQDNGL GMDPRGMQEF FLVVGSDRRL DAKRGDTSKL YGRKVMGRKG VGKLAPFGIC KTLEVISSGG EKVVRRQAGG NTETGYLTSH ILLDYDDIVG DDDGDYQPTV GSLDNSVQPS RGTTIKLSRF SYRRVPEIEH LSRQVAQRFG IRSDKWKVLL RDSTMTDGAN GSEVSVGEFD INVMEGTRIE FMGPDGPTVS TVSADGYQAR TPIGDLITSF NAGFSHDGRF YPVKGWVAYA RESYRDDLMA GVRIYCRHKI AAQTALFNRG AGFHGEHSVR SYFIGELSCD WLDEYEDLIQ TDRRDILWSH DLGQAFQEWG QSLVLEVGKR ARDPMRKKTR EVFREVGRVE ERVNAAFPRP EQRDLREKAT EIAEMLGKSL REDEVGDFDI VGPLVTLSID LAPHISLERK LREAAEAENT PAAVIGSILR TAHLAELHSF GRIAYDRVRV IERLKSLKDD PKTVEEELQE LIENAPWLIN PEWAPITANQ ALRTLKIEFE EYYRLRTGQS ITLRDFAETQ KRPDFVAFAV GQQLEVVEIK RPFHKLMNDE MERINRYYTE MRDFLDDPGH AAFKKEFQDF RITLVCDGLS LSGMAKTAFE GITKEGRLEH VKWRDFLLRT EMSHKQFLEE AERQKRDAAQ RD
|
| |