Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4274 |
Symbol | |
ID | 3971697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 4758981 |
End bp | 4762067 |
Gene Length | 3087 bp |
Protein Length | 1028 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637927378 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_534117 |
Protein GI | 90425747 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.752611 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGGACA ATTCTGCTCT TCCCGTATTC AGCGCGCCCT ATGCCGCCGA CGACGGCGAT CTTGCCGCCG CGCTGTTGCC GACCGCGCGG CTGTCGCCCG AGCGCGAGGC CCGGATCGAC GCCAGCGCAA CGCGGCTGAT CGCGGCGATC CGCGCCGACC ATGACCGGCT CGGCGGCGTC GAGGAAATGT TGCGCGAATT CGCGTTGTCC ACCAAGGAGG GCGTCGCGCT GATGGTGCTG GCGGAGGCGC TGTTGCGGGT GCCGGACGCG CTCACCGCCG ACCAGTTCAT CGAGGACAAG CTCGGCCAGG GCGATTTCGA ACACCACGCC ACCCGGTCCG GCGCGCTGCT GGTCAACGCC TCGGCCTGGG CGCTGGGGAT TTCCGCGCGG GTCGTTCACA CATCGGAAAC CCCGCAAGGC ATACTCGCCA GTTTAAGCAA ACGCATCGGC GCGCCAGCGG TGCGCGCCGC CACCCGCGCG GCGATGCGGC TGATGGGCAA TCACTTCGTG CTCGGCGAGA CCATCGCAGC GGCGCTGCAA CGGGCGCAGG GCGGCGGCGC GCGTTATTCG TTCGACATGC TCGGCGAAGG CGCGCGCACG CAAGCCGACG CCGACCGTTA CTTCGCCTCT TATGCGGCGG CGATCGACGC CATCGGGCGC AGCGCCGGCA CTGCCCGACT GCCGGCACGT CCCGGCATTT CGGTGAAACT CTCGGCGCTG CATCCGCGGT TCGAGGCGCT CAGCCGTGCC CGGGTGATGG ACGAACTGGT GCCGCGGGTG ATCGAGCTGG CGCGGCAGGC CAAGTCGTAT GACCTCAACC TCACGCTCGA CGCCGAGGAA GCCGACCGGC TCGAACTGTC GCTCGAGGTG TTCGCCGCGG TGTTGCGCGA TCCGTCGTTG GCCGGCTGGG ACGGCTTTGG CCTCGCGGTG CAGGCCTATC AGAAGCGCGC GCTGGCGGTG ATCGATCATG CGGCTGATCT CGCACAACGG CTCGACCGCC GGCTGATGCT GCGGCTGGTC AAGGGCGCCT ATTGGGACAG CGAGATCAAG CGCGCGCAGG AGCGCGGGCT CGCCGACTAT CCGGTGTTCA CCCGCAAGGC GATGACCGAC CTCAACTACC TCGCCTGCGT GCGAAGACTG CTGGGGCTGC GGCCGCAGAT CTATCCGCAA TTCGCCACCC ACAACGCGCT CACCGTGGCA AGCATTCTGG AGCTCGCCGG CGATAGCGAC GGCTTCGAAT TGCAGCGGCT GCACGGCATG GGCGAAGCGC TCTATGCGCG ACTGCGGCAA GATCATCCGG CGCTGCCGTG CCGGATCTAC GCCCCGGTCG GCGGACACCG CGATCTGTTG GCCTATCTGG TGCGGCGACT GTTGGAGAAC GGCGCCAATT CCTCTTTCGT GGCGCTGGCC GGCGACGATC GCGTGCCGGT GGCGAATCTG CTGCGGCGGC CCGCCGACAT CGTCGGCGAC GCCGCGCGGG CGCGGCACCC AAAGATTCCG CTGCCGCGCG AGCTGGTTCG GCCGCGGCTC AATTCGGGTG GCTTCGAGTT CGGCGATCGC GCCACGGTGC AGGCGCTGCT GGCCGAGATC GCCGCGCAAA CCCAGCCGGT CAGCGCCACG CCGCTGATCG ACGGCGTCGC GAGTGGCGGA GTCGGGCGAC CGGTGATCAG CCCGATCGAT TCCACCACCG TCGTCGGCGA GGTGTTCGAA GCCACGCCGG ATCAGGTCGC GCAGGCGATC ACCGCGGCGC GGCGCGGATT CGTGACGTGG AGCCGCACGC CGGCGGACGC GCGCGCGGCG ATTCTGCTAT GCGCGGCCAC ACTGCTCGAA CAGCGTCGCG CGCAATTCGT CGCGCTGCTG CAGCGCGAGG CCGGCAAGAC GCTGGAGGAT TGTCTGTCCG AAGTGCGCGA GGCGGTGGAT TTCTGCCGCT ATTACGCGAG CGAAGGGCGC CGGCTGTTCG GCGAAGGCGA GACGATGCCG GGGCCGACCG GCGAGAGCAA TGTGCTGAGC CTGCGCGGCC GCGGCGTGTT CGTGGCGATC TCGCCGTGGA ATTTTCCGCT GGCGATTTTC TTGGGCCAAA TCAGCGCCGC GCTGATGGCC GGCAATACCG TGGTGGCCAA ACCCGCCGAA CAGACGCCGC TGATCGCGGC CCTGGCGGTG CGGCTGCTGC ACGAGGCCGG CGTGCCAAAC TCCGCGCTGC AGCTTCTGCC AGGCGCCGGC GCGATCGGCG CGTCGCTCGC GGCGCATTCC GACATCGATG GCGTGGTGTT CACCGGATCG GGTGAGGTGG CGCGCGCGAT CAACCGGGCG CTCGCCGCCA AAGACGGCCC GATCGTGCCG CTGATCGCCG AAACCGGCGG CATCAACGCG ATGATCGTCG ACGCCACCGC GCTGCCCGAG CAGGTCGCCG ACGACGTCGT CACCTCGGCC TTCCGCTCCG CCGGACAGCG CTGCTCGGCG CTGCGGCTGC TGTTCGTGCA AGACGACGTC GCCGACCGCA TGATCGAGAC CATCGCGGGC AGCGCACGGG AGTTGAGCGT CGGCGATCCG CGCGATCCGG CGACGCAGCT CGGGCCGGTG ATCGACGCCG ACGCCGCGGC CCGGCTCGAA ACCCACATCG CCCGGATGAA GCGCGAGGCG CGGGTGCACT TCGCCGGCCA CGCGCCGGGC CCGGGTTACG TCGCGCCGCA TCTGATCGAA TTGGCCGGCG CCGATCAGCT CCACGACGAA GTGTTCGGCC CAATCCTGCA TGTGGTGCGC TACGCCGCAG ATCAGTTCGA CGCGGTGCTG CAATCGATTG CGCGCAGCGG CTACGGGCTG ACGCTGGGAC TGCATTCGCG GGTGGATGCG ATGATCGCGC GCGCGATCGA GCGACTTCCG ATCGGCAATG TCTACGTCAA CCGCAATATG ATCGGCGCGG TGGTGGGTGT GCAGCCGTTT GGCGGATCGG GGCTGTCCGG CACCGGTCCG AAAGCCGGCG GGCCGCATTA CCTGCCCCGG TTTGCGATCG AACAGACCGT CAGCATCAAC ACCGCGGCAG CCGGCGGCAA TGCGGCGTTG CTGTCGGAGG GCGACGAGGA TGGCTGA
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Protein sequence | MLDNSALPVF SAPYAADDGD LAAALLPTAR LSPEREARID ASATRLIAAI RADHDRLGGV EEMLREFALS TKEGVALMVL AEALLRVPDA LTADQFIEDK LGQGDFEHHA TRSGALLVNA SAWALGISAR VVHTSETPQG ILASLSKRIG APAVRAATRA AMRLMGNHFV LGETIAAALQ RAQGGGARYS FDMLGEGART QADADRYFAS YAAAIDAIGR SAGTARLPAR PGISVKLSAL HPRFEALSRA RVMDELVPRV IELARQAKSY DLNLTLDAEE ADRLELSLEV FAAVLRDPSL AGWDGFGLAV QAYQKRALAV IDHAADLAQR LDRRLMLRLV KGAYWDSEIK RAQERGLADY PVFTRKAMTD LNYLACVRRL LGLRPQIYPQ FATHNALTVA SILELAGDSD GFELQRLHGM GEALYARLRQ DHPALPCRIY APVGGHRDLL AYLVRRLLEN GANSSFVALA GDDRVPVANL LRRPADIVGD AARARHPKIP LPRELVRPRL NSGGFEFGDR ATVQALLAEI AAQTQPVSAT PLIDGVASGG VGRPVISPID STTVVGEVFE ATPDQVAQAI TAARRGFVTW SRTPADARAA ILLCAATLLE QRRAQFVALL QREAGKTLED CLSEVREAVD FCRYYASEGR RLFGEGETMP GPTGESNVLS LRGRGVFVAI SPWNFPLAIF LGQISAALMA GNTVVAKPAE QTPLIAALAV RLLHEAGVPN SALQLLPGAG AIGASLAAHS DIDGVVFTGS GEVARAINRA LAAKDGPIVP LIAETGGINA MIVDATALPE QVADDVVTSA FRSAGQRCSA LRLLFVQDDV ADRMIETIAG SARELSVGDP RDPATQLGPV IDADAAARLE THIARMKREA RVHFAGHAPG PGYVAPHLIE LAGADQLHDE VFGPILHVVR YAADQFDAVL QSIARSGYGL TLGLHSRVDA MIARAIERLP IGNVYVNRNM IGAVVGVQPF GGSGLSGTGP KAGGPHYLPR FAIEQTVSIN TAAAGGNAAL LSEGDEDG
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