Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4229 |
Symbol | |
ID | 3972952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4705787 |
End bp | 4707955 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637927332 |
Product | hypothetical protein |
Protein accession | YP_534072 |
Protein GI | 90425702 |
COG category | [S] Function unknown |
COG ID | [COG4694] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0264095 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACCGG ATCCCAATAC CGGATACTTG CCTGCAGCGT GCGAGTTCGA GTTCACTACA GACAGCGGCG AGACGGTGCG AGCCGGCACT CTAAACGCTT TGAATAGCCG TCTGGCGGTT TTCAATGAGG ACTTCATTGA TCTAAACCTG CAGTGGTCGG CCGGCAAGGC GCGCCCTGTG TTCTATATCG GCAAAGAACA AGCCGAAGCA GCTGCGAATC TGAAAAGGAC TGAAGCAGCT ATACCGGCGG CGACTGAGCG AAAGGCAGGT GCCGAGAAGC TTGTCAGGGC CGGGGAACAG CAAGTTGCTA CATTCAAGCG TGAAGTGGCT CGGAAGATCT CTCAGGAAAT CAGACCGGCA AATCGAAAAT ATGAGGCGCC CCAGCTCACC TCCGATTATG CTGCACTTGA TTTGGATGCG GGAGCAACAC TCAACGATAC ACAACTGGCG GCGCAGCGGG AGTTGTGTCG GCGAGATGAG GCAATGCCGG AACTCGCGAA TGTAGACTTC GATACCGCAC CGGCAAACGT CGCATTGCAA ACGGCGATCC GCCTGCTGCA GGAGACTCCG AGCCTCACAA TAATTCCTGA ACTGGAGACG CACTCGGAAA TGTTGCGGTG GGTTCAAGAG GGGGTAGACT ATCACGAAAA CCACGGACTC AATGAGTGTC TATTGTGCGG CGGTATTCTA TCGTCCGAGC GCAAAGATCT GTTGGCGAGC GCGTTAGACG AGGGTTTTGA GAAATTTCAA GAGGCGCTCG ACCTCGCAAA GGAGAAACTA GAGGCCGAGC GGGAACGCTA TCAGAAAATA GCGTTGTCGA TTTCATCATC CAGGGACGTC GTGGCCGATC GGCGCGAAGA ATACGACCAA GCCGCCGGTC GGGTGAAGGA GGAGCTCGCC GATTCCATTG CGAAGGTACT TGAACCGGCG ATTGCGGCGA TCGACGCGAA GTTGGCGAGG CCGACTCTCA AGCCTGACGC TAAGGCGATG ACGTGGGGTG ATTCGCGGCT GACCGACGAA GCCTTTGCGC GGATCGAATC CTGGGGAGGG GTATTGAATC TTAATATCGC AAGACACAAC GAGGCGTGCG CCAGCTTTTC TCAACGTCAG GAGGACGCGC GCCTTGCCCT GCGTAGGCAC CATTTGGCCG AGAATCACCA GGAGTATGCG AGCGTTGGCG AGGCGGTGGC CAGTGCGGAG AATGAACTCA AGGCCGCGAC TAGCGAACTC CAGGCGCTTC AGGCCGAAGC GCGCGATCTG AGTGTGCGTG TGAAGGAACA CGGGCAAGCC GCCGCGAAAA TCAACCGGCT GATCGAAGCG TATCTCGGCC ACAAGGAACT CTCGATTGTC AGCGTTGATA AGGGCTACGA AATCCACCGG CGTGGTCGAC CCATCGAGGG TAGCCCCAGC GAGGGGGAAA AAACAGCGAT AGCCATATGT TACTTCCTGT CGACGCTGGA AGCTGACGGG AAATCTATAA AGGACAGCAT CGTCGTGGTG GATGATCCAA TATCGAGTCT CGACAGCAAG GCTCTCAACT ACGCCTGCTC CTTGCTCTTA AGTCGGCTTG CGGATGCATC CCAGGTTTTC GTGCTGACCC ACAATCAGAA CTGTATGAAC GAGTTTAAGA AGGCATGGAG CCGCTTCCAT CGACCGCGCA AAGAAAATGC CACGCCGACC GCCAGTCTTC TTTTCCTGGA CGTCAAAATT CCCCACGGAG GAGAGACGCG CACTACCACG ATCGTGGAAA TGTCGCGATT GCTTCGTGAG TACGACTCCG AATATCACTA TCTCGTCGAC CACGTTCTCA AGTTCCATGC GAGTAACGAC TCGGAGTATG AGTACGCCTA TATGATTCCG AACGTCCTTC GGAGGGTGCT CGACGTATTC CTCGCGTTCC GCTGCCCGGG CAGCGCTGGC TTCGCGGGCA AGATGGAACA GCTTGGGAAG GACTACGAAG CGCTCGACGG CGAGCGGGTG GCAGCGTTAC AGCGACTTGT TCAGCTAGAA TCCCATTCGG ATAGCGTTGA CGATCTCATT GGATTTTCGT CGATGACGCT CGAGGAAAGT AAGTCCGCGG CTGCGGCGCT GGTCGGCTTG ATGGAAATTG TGGATCCGAA TCACCTGGCC GCGTTGCGTC GCCTGTGCCG ACCCGGCAAA GGTGGGTAG
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Protein sequence | MQPDPNTGYL PAACEFEFTT DSGETVRAGT LNALNSRLAV FNEDFIDLNL QWSAGKARPV FYIGKEQAEA AANLKRTEAA IPAATERKAG AEKLVRAGEQ QVATFKREVA RKISQEIRPA NRKYEAPQLT SDYAALDLDA GATLNDTQLA AQRELCRRDE AMPELANVDF DTAPANVALQ TAIRLLQETP SLTIIPELET HSEMLRWVQE GVDYHENHGL NECLLCGGIL SSERKDLLAS ALDEGFEKFQ EALDLAKEKL EAERERYQKI ALSISSSRDV VADRREEYDQ AAGRVKEELA DSIAKVLEPA IAAIDAKLAR PTLKPDAKAM TWGDSRLTDE AFARIESWGG VLNLNIARHN EACASFSQRQ EDARLALRRH HLAENHQEYA SVGEAVASAE NELKAATSEL QALQAEARDL SVRVKEHGQA AAKINRLIEA YLGHKELSIV SVDKGYEIHR RGRPIEGSPS EGEKTAIAIC YFLSTLEADG KSIKDSIVVV DDPISSLDSK ALNYACSLLL SRLADASQVF VLTHNQNCMN EFKKAWSRFH RPRKENATPT ASLLFLDVKI PHGGETRTTT IVEMSRLLRE YDSEYHYLVD HVLKFHASND SEYEYAYMIP NVLRRVLDVF LAFRCPGSAG FAGKMEQLGK DYEALDGERV AALQRLVQLE SHSDSVDDLI GFSSMTLEES KSAAAALVGL MEIVDPNHLA ALRRLCRPGK GG
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