| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4089 |
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| Symbol | |
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| ID | 3973178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4542803 |
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| End bp | 4544344 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637927193 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_533934 |
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| Protein GI | 90425564 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02645] putative thymidine phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0836613 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCG CCGACGCGCC CCGCCCGCAA CTCAAGATCC GCCTGATCCA TCTCGACACC
GGCCGCGAAA ACGTCGCGGT GATGTCGCGG CGCTCAAAGG CGCTGCGCCC GGAGGTGTTC
AGCGGCTTCA GCCGGGTCGA GATCCGCCGC AATGCGAAGT CGGTGCTGGC GACCTTGCTG
ATTACCGACG ACGACGCGCT GGTCGGGCCG GACGAACTCG GCCTCGCCGA GCCGGCGTTC
CGGCGTTTCG GCGAACCCGC CGGGACCTTC GTCACGGTGT CGCCGGCGAC GCCGCCGGAC
AGTCTCGACG CGGTGCGCGG CAAGATCCAG GGCCGCACGC TGAGCGCGGC GGAGATCACC
GCCATCGTCA ACGATCTCAC CCGCTATCGT TATTCCGACA TGGAGATCGC CGCCTTCCTG
ATCGGCGCGG CGCGGTTCAT GACTTCGGAC GAACTGCTGG CGCTGGTGTC GGCGATGGCC
TCGGTCGGCA CTCAGTTGCG CTGGGATCGC CCGATCGTGG TCGACAAGCA TTGCATCGGC
GGCATTCCCG GCAATCGCAC CTCGATGATC CTGGTGCCGA TCGTCGCCGC GCACGGGCTG
ACGATTCCGA AAACCTCGTC GCGCGCCATC ACCTCGCCGG CCGGCACCGC CGATACCATG
GAGGTGTTGG CGCGGGTCGA TGTCAGCGTC GCGGAAATGA AAGAGATCGT CGCCGCCTGC
AACGGCTGTC TGATCTGGGG CGGCCACGTC AATCTCTCGC CCGCCGATGA CATCTTGATC
TCGGTGGAGC GGCCGCTGTG TCTCGACACC CGCGAGCAGA TGGTGGCCTC GATCATGTCG
AAGAAGCTCG CCGCCGGCTC GACGCATCTG TTGGTCGATC TGCCGGTCGG CCCGACCGCC
AAGGTCGCCA GCGCACTCGA CGCGATGCGG CTGCGCAAGC TGTTCGAATT CGTCGGCGAT
CATTTCGGCA TCGCGGTGGA GACCATCACC ACCGACGGCC GGCAGCCGAT CGGCAACGGC
ATCGGCCCGG TGCTGGAGGC GCAGGACGTC ATGGCGGTGC TCGGCAACGA TCCGAAGGCT
CCCGCCGATC TGCGCGAAAA ATCGCTACGG TTGGCGGCGC ATCTGTTGGA ATACGATCCG
CATCTGCGCG GCGGCGCGGG CTACGCGCGG GCCCGCGAGT TGCTGGAAAG CGGCGCGGCG
CTGAAGCAGA TGCAGAAGAT CATCGACAAT CAGGGGCCTT CGACCTGTCA CAAGGACCTC
GGAACGCTGA CCGCCGAGGT GACGGCGGAG CGCGACGGCG TGGTGTCGGC GATCGATTGC
CTGCAGCTCA ATCGGCTGGC GCGCACCGCC GGCGCGCCGA TCGACAAGGG CGCCGGCATC
CGGCTGTTCA AGAAGGTCGG CGATCGTGTC GAGGCCGGCG AGCCGCTGTA TCGAATTTAC
GCCTTCGATC CGGCCGAGCG CGAACTCGCG GTGGCTGCCG CCAAGCTCGC CTGCGGTTAC
ACGGTCGACG ACGCGCAAAC CTTTCGCGAG CAGGTGATGT AG
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| Protein sequence | MTSADAPRPQ LKIRLIHLDT GRENVAVMSR RSKALRPEVF SGFSRVEIRR NAKSVLATLL
ITDDDALVGP DELGLAEPAF RRFGEPAGTF VTVSPATPPD SLDAVRGKIQ GRTLSAAEIT
AIVNDLTRYR YSDMEIAAFL IGAARFMTSD ELLALVSAMA SVGTQLRWDR PIVVDKHCIG
GIPGNRTSMI LVPIVAAHGL TIPKTSSRAI TSPAGTADTM EVLARVDVSV AEMKEIVAAC
NGCLIWGGHV NLSPADDILI SVERPLCLDT REQMVASIMS KKLAAGSTHL LVDLPVGPTA
KVASALDAMR LRKLFEFVGD HFGIAVETIT TDGRQPIGNG IGPVLEAQDV MAVLGNDPKA
PADLREKSLR LAAHLLEYDP HLRGGAGYAR ARELLESGAA LKQMQKIIDN QGPSTCHKDL
GTLTAEVTAE RDGVVSAIDC LQLNRLARTA GAPIDKGAGI RLFKKVGDRV EAGEPLYRIY
AFDPAERELA VAAAKLACGY TVDDAQTFRE QVM
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