Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4074 |
Symbol | |
ID | 3973355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 4527254 |
End bp | 4528939 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637927178 |
Product | Long-chain-fatty-acid--CoA ligase |
Protein accession | YP_533919 |
Protein GI | 90425549 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGCGCA TCTGGCTCAA GCATTATCCG CCCGGCGTGC CCGCGGACAT CGACGTCAAC CAATACCCGT CGCTGGTCGA CCTGCTGGAA GAGAGCTTCG CGAAATTTCG CGACCGCAAA GCCTTCATCT GTATGGACAA GGCGATCAGT TACGGCCAGC TCGACGAGAT GTCGACGGCG CTCGGCGCTT ATCTGCAAAG CAAGGGGTTG AAGCAGGGCG CGCGCGTCGC GGTGATGATG CCGAACGTGC TGCAATATCC GATCGCCACC GCCGCGGTGC TGCGCGCCGG CTTTGCCGTG GTCAACGTCA ATCCGCTCTA CACCCCGCGC GAGCTCGAAC ATCAGCTGAA GGATTCCGGC GCCGAGGCGA TCATCGTGTT GGAGAACTTC GCCTCCACCG TCGAGCATGT GATCGCGCGC ACCGGCGTGA AGCACGTCAT CGTTGGCGCC ATGGGCGACC TGCTCGGCTT CAAAGGCGTC ATCGTCAACT TCGTGGTGCG CCGGGTCAAG AAAATGGTGC CGGCGTTCTC GCTGCCGAGC AAGGTGGCGT TCAACGACGC GCTGGCCGCA GGGCGCAGCC TCAAATTTGC CAAGCCGACA ATCGGCCCGG ACGACGTCGC CTTCCTGCAA TATACCGGCG GCACTACCGG CGTGTCGAAG GGCGCCACGC TGCTGCATCG CAACGTGGTC GCCAACGTGC TGCAGAACGA CGCCTGGCTG CAGCCGGCGC TCACCAAACC GCCGCATGTC GATCAGTTGT TCATCGTCTG CGCGCTGCCG CTGTATCATA TCTTCGCGCT CACCGTCTGC TTCCTGCTGG CGATGCGCGC CGGCGGCGTC AACCTATTGA TCCCCAATCC GCGCGACATG AAGAGCTTCA TCAAGGAATT GAAGAAGTAT CAGGTCAACA GCTTCCCCGC GGTCAACACG CTGTACAACG GCCTGCTGCA CGCCGAGGGG TTCGACCAGG TGGACTTCTC CAAGCTGAAA ATTTCCAACG GCGGCGGCAT GGCGGTGCAA CGCCCGGTCG CCGAGCAGTG GAGCAAGCTC ACCGGCTGCG GCATCGCCGA AGGCTACGGG CTGTCGGAAA CCGCGCCGGT CCTGACCTGC AACCCGGCGA CTATCGACAG CTTCACCGGA TCGATCGGCC TGCCGCTGCC CTCGACCTAT CTGTCGATCC GCGACGACGC CGGCAACGAA TTGTCGCTCG GCCAGATCGG CGAGATCTGC GCCAAGGGTC CGCAAGTGAT GGCCGGTTAT TGGAACATGC CGGAGGAAAC CGCGCTGGTG ATGACCGAGG ACGGTTACTT CCGCACCGGC GACATCGGGG TGATGAGTGA AGACGGCTCC ACCAAGATCG TCGACCGCAA GAAGGACATG ATCCTGGTGT CGGGCTTCAA CGTCTATCCG AACGAGGTCG AGGAAGTCAT CGCCACCCAT CCCGGCGTGC TGGAATGCGC CGTGGTCGGC GTCCATGATT CGCGCAGCAA CGAATCGGTG AAAGCCTTCG TGGTGAGGAA AGATCCCGAG GTGACCGCCG AAGAGATCAT CAAGTTCTGC CATACCCAGC TGACCAACTA CAAAGTGCCG AAACAGATCG AATTCCGCAC CGAACTGCCG AAGACCAATG TCGGCAAGAT CCTGCGCCGG CAATTGCGCG ACGAGAAGAA ACAGGCCGCG GCGTAA
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Protein sequence | MERIWLKHYP PGVPADIDVN QYPSLVDLLE ESFAKFRDRK AFICMDKAIS YGQLDEMSTA LGAYLQSKGL KQGARVAVMM PNVLQYPIAT AAVLRAGFAV VNVNPLYTPR ELEHQLKDSG AEAIIVLENF ASTVEHVIAR TGVKHVIVGA MGDLLGFKGV IVNFVVRRVK KMVPAFSLPS KVAFNDALAA GRSLKFAKPT IGPDDVAFLQ YTGGTTGVSK GATLLHRNVV ANVLQNDAWL QPALTKPPHV DQLFIVCALP LYHIFALTVC FLLAMRAGGV NLLIPNPRDM KSFIKELKKY QVNSFPAVNT LYNGLLHAEG FDQVDFSKLK ISNGGGMAVQ RPVAEQWSKL TGCGIAEGYG LSETAPVLTC NPATIDSFTG SIGLPLPSTY LSIRDDAGNE LSLGQIGEIC AKGPQVMAGY WNMPEETALV MTEDGYFRTG DIGVMSEDGS TKIVDRKKDM ILVSGFNVYP NEVEEVIATH PGVLECAVVG VHDSRSNESV KAFVVRKDPE VTAEEIIKFC HTQLTNYKVP KQIEFRTELP KTNVGKILRR QLRDEKKQAA A
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