| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4074 |
|---|
| Symbol | |
|---|
| ID | 3973355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 4527254 |
|---|
| End bp | 4528939 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637927178 |
|---|
| Product | Long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_533919 |
|---|
| Protein GI | 90425549 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGCA TCTGGCTCAA GCATTATCCG CCCGGCGTGC CCGCGGACAT CGACGTCAAC
CAATACCCGT CGCTGGTCGA CCTGCTGGAA GAGAGCTTCG CGAAATTTCG CGACCGCAAA
GCCTTCATCT GTATGGACAA GGCGATCAGT TACGGCCAGC TCGACGAGAT GTCGACGGCG
CTCGGCGCTT ATCTGCAAAG CAAGGGGTTG AAGCAGGGCG CGCGCGTCGC GGTGATGATG
CCGAACGTGC TGCAATATCC GATCGCCACC GCCGCGGTGC TGCGCGCCGG CTTTGCCGTG
GTCAACGTCA ATCCGCTCTA CACCCCGCGC GAGCTCGAAC ATCAGCTGAA GGATTCCGGC
GCCGAGGCGA TCATCGTGTT GGAGAACTTC GCCTCCACCG TCGAGCATGT GATCGCGCGC
ACCGGCGTGA AGCACGTCAT CGTTGGCGCC ATGGGCGACC TGCTCGGCTT CAAAGGCGTC
ATCGTCAACT TCGTGGTGCG CCGGGTCAAG AAAATGGTGC CGGCGTTCTC GCTGCCGAGC
AAGGTGGCGT TCAACGACGC GCTGGCCGCA GGGCGCAGCC TCAAATTTGC CAAGCCGACA
ATCGGCCCGG ACGACGTCGC CTTCCTGCAA TATACCGGCG GCACTACCGG CGTGTCGAAG
GGCGCCACGC TGCTGCATCG CAACGTGGTC GCCAACGTGC TGCAGAACGA CGCCTGGCTG
CAGCCGGCGC TCACCAAACC GCCGCATGTC GATCAGTTGT TCATCGTCTG CGCGCTGCCG
CTGTATCATA TCTTCGCGCT CACCGTCTGC TTCCTGCTGG CGATGCGCGC CGGCGGCGTC
AACCTATTGA TCCCCAATCC GCGCGACATG AAGAGCTTCA TCAAGGAATT GAAGAAGTAT
CAGGTCAACA GCTTCCCCGC GGTCAACACG CTGTACAACG GCCTGCTGCA CGCCGAGGGG
TTCGACCAGG TGGACTTCTC CAAGCTGAAA ATTTCCAACG GCGGCGGCAT GGCGGTGCAA
CGCCCGGTCG CCGAGCAGTG GAGCAAGCTC ACCGGCTGCG GCATCGCCGA AGGCTACGGG
CTGTCGGAAA CCGCGCCGGT CCTGACCTGC AACCCGGCGA CTATCGACAG CTTCACCGGA
TCGATCGGCC TGCCGCTGCC CTCGACCTAT CTGTCGATCC GCGACGACGC CGGCAACGAA
TTGTCGCTCG GCCAGATCGG CGAGATCTGC GCCAAGGGTC CGCAAGTGAT GGCCGGTTAT
TGGAACATGC CGGAGGAAAC CGCGCTGGTG ATGACCGAGG ACGGTTACTT CCGCACCGGC
GACATCGGGG TGATGAGTGA AGACGGCTCC ACCAAGATCG TCGACCGCAA GAAGGACATG
ATCCTGGTGT CGGGCTTCAA CGTCTATCCG AACGAGGTCG AGGAAGTCAT CGCCACCCAT
CCCGGCGTGC TGGAATGCGC CGTGGTCGGC GTCCATGATT CGCGCAGCAA CGAATCGGTG
AAAGCCTTCG TGGTGAGGAA AGATCCCGAG GTGACCGCCG AAGAGATCAT CAAGTTCTGC
CATACCCAGC TGACCAACTA CAAAGTGCCG AAACAGATCG AATTCCGCAC CGAACTGCCG
AAGACCAATG TCGGCAAGAT CCTGCGCCGG CAATTGCGCG ACGAGAAGAA ACAGGCCGCG
GCGTAA
|
|---|
| Protein sequence | MERIWLKHYP PGVPADIDVN QYPSLVDLLE ESFAKFRDRK AFICMDKAIS YGQLDEMSTA
LGAYLQSKGL KQGARVAVMM PNVLQYPIAT AAVLRAGFAV VNVNPLYTPR ELEHQLKDSG
AEAIIVLENF ASTVEHVIAR TGVKHVIVGA MGDLLGFKGV IVNFVVRRVK KMVPAFSLPS
KVAFNDALAA GRSLKFAKPT IGPDDVAFLQ YTGGTTGVSK GATLLHRNVV ANVLQNDAWL
QPALTKPPHV DQLFIVCALP LYHIFALTVC FLLAMRAGGV NLLIPNPRDM KSFIKELKKY
QVNSFPAVNT LYNGLLHAEG FDQVDFSKLK ISNGGGMAVQ RPVAEQWSKL TGCGIAEGYG
LSETAPVLTC NPATIDSFTG SIGLPLPSTY LSIRDDAGNE LSLGQIGEIC AKGPQVMAGY
WNMPEETALV MTEDGYFRTG DIGVMSEDGS TKIVDRKKDM ILVSGFNVYP NEVEEVIATH
PGVLECAVVG VHDSRSNESV KAFVVRKDPE VTAEEIIKFC HTQLTNYKVP KQIEFRTELP
KTNVGKILRR QLRDEKKQAA A
|
|---|
| |