Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4002 |
Symbol | |
ID | 3969348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4450931 |
End bp | 4451719 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637927106 |
Product | 3-hydroxybutyrate dehydrogenase |
Protein accession | YP_533847 |
Protein GI | 90425477 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01963] 3-hydroxybutyrate dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.36944 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGCACGT TGACAGGCAA GACCGCGGTG GTGACCGGAT CGACCAGCGG CATCGGATTG GCCTATGCGC GCGCCTTCGC CGGCGCCGGC GCCAATGTGG TGATCAACGG CATGGGCGAG GCGGCCGACA TCGAGCGCGA GCGCGCCAAG ATCGAGAGCG ATTTCTCCGT CAAGGCGGTG CATTCGCCGG CCGACATGCT GAAGCCCGCC GAGATCGCCG AGATGATCAA GCTCGGCGAG AAGACCTTCG GTTCGGTCGA CGTGCTGGTC AACAATGCCG GCATCCAGTT CGTCGCGCCG ATCGAGGAAT TCCCGATCGA GAAGTGGGAC GCCATCATCG CCATCAATCT GTCGTCGGCG TTTCACGGCA TCCGCGCGGC GATCCCCGGC ATGAAGCAGC GCGGCTGGGG CCGCATCATC AACACCGCCT CGGCGCATTC GCTGGTGGCC TCGCCGTTCA AATCGGCCTA TGTGGCCGCC AAGCACGGTA TCGCCGGCCT CACCAAGACC GCGGCCTTGG AGCTTGCGAC CTTCAAGATC ACGGTGAACT GCATCTCGCC GGGCTATGTC TGGACGCCTT TGGTGGAGAA GCAGATCCCC GATACCATGA AGGCGCGCGG GCTCACCAAG GAGCAGGTGA TCAACGACGT GTTGCTGCAG GCGCAGCCGA CCAAGCAGTT CGTCACCGCC GAGCAGGTCG CGGCGTTGGC GCTGTATCTA TGCGGCGATG ACGCCAGCCA AATCACCGGC GCCAATTTGT CGATGGACGG CGGCTGGACC GCGGCGTAG
|
Protein sequence | MGTLTGKTAV VTGSTSGIGL AYARAFAGAG ANVVINGMGE AADIERERAK IESDFSVKAV HSPADMLKPA EIAEMIKLGE KTFGSVDVLV NNAGIQFVAP IEEFPIEKWD AIIAINLSSA FHGIRAAIPG MKQRGWGRII NTASAHSLVA SPFKSAYVAA KHGIAGLTKT AALELATFKI TVNCISPGYV WTPLVEKQIP DTMKARGLTK EQVINDVLLQ AQPTKQFVTA EQVAALALYL CGDDASQITG ANLSMDGGWT AA
|
| |