Gene RPC_4002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4002 
Symbol 
ID3969348 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp4450931 
End bp4451719 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content64% 
IMG OID637927106 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_533847 
Protein GI90425477 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.36944 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCACGT TGACAGGCAA GACCGCGGTG GTGACCGGAT CGACCAGCGG CATCGGATTG 
GCCTATGCGC GCGCCTTCGC CGGCGCCGGC GCCAATGTGG TGATCAACGG CATGGGCGAG
GCGGCCGACA TCGAGCGCGA GCGCGCCAAG ATCGAGAGCG ATTTCTCCGT CAAGGCGGTG
CATTCGCCGG CCGACATGCT GAAGCCCGCC GAGATCGCCG AGATGATCAA GCTCGGCGAG
AAGACCTTCG GTTCGGTCGA CGTGCTGGTC AACAATGCCG GCATCCAGTT CGTCGCGCCG
ATCGAGGAAT TCCCGATCGA GAAGTGGGAC GCCATCATCG CCATCAATCT GTCGTCGGCG
TTTCACGGCA TCCGCGCGGC GATCCCCGGC ATGAAGCAGC GCGGCTGGGG CCGCATCATC
AACACCGCCT CGGCGCATTC GCTGGTGGCC TCGCCGTTCA AATCGGCCTA TGTGGCCGCC
AAGCACGGTA TCGCCGGCCT CACCAAGACC GCGGCCTTGG AGCTTGCGAC CTTCAAGATC
ACGGTGAACT GCATCTCGCC GGGCTATGTC TGGACGCCTT TGGTGGAGAA GCAGATCCCC
GATACCATGA AGGCGCGCGG GCTCACCAAG GAGCAGGTGA TCAACGACGT GTTGCTGCAG
GCGCAGCCGA CCAAGCAGTT CGTCACCGCC GAGCAGGTCG CGGCGTTGGC GCTGTATCTA
TGCGGCGATG ACGCCAGCCA AATCACCGGC GCCAATTTGT CGATGGACGG CGGCTGGACC
GCGGCGTAG
 
Protein sequence
MGTLTGKTAV VTGSTSGIGL AYARAFAGAG ANVVINGMGE AADIERERAK IESDFSVKAV 
HSPADMLKPA EIAEMIKLGE KTFGSVDVLV NNAGIQFVAP IEEFPIEKWD AIIAINLSSA
FHGIRAAIPG MKQRGWGRII NTASAHSLVA SPFKSAYVAA KHGIAGLTKT AALELATFKI
TVNCISPGYV WTPLVEKQIP DTMKARGLTK EQVINDVLLQ AQPTKQFVTA EQVAALALYL
CGDDASQITG ANLSMDGGWT AA