| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3996 |
|---|
| Symbol | |
|---|
| ID | 3969342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 4446624 |
|---|
| End bp | 4447394 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637927100 |
|---|
| Product | IclR family transcriptional regulator |
|---|
| Protein accession | YP_533841 |
|---|
| Protein GI | 90425471 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.285911 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGG AAAGCGATGG ATTCGTCCGC GCGATCGCGC GGGGATTCTC GGTGGTCGAA
GCGTTGGGAC GACCGCCCGG CCGCCACACG CTCTCGGAGG CGGCGGTGTC GGCGGGGCTG
AACCGGGCCA CCGCGCGGCG CATGTTGGCG ACGTTGGTAG CGCTGAATTA CTGCGAGGTC
GAGGGTCGTT ACTTCAGTCT GCGGCCGCGC GCGCTGGGGC TCGGGCTGTC TTATCTCAAC
GCGCTGCCCT ATTGGGGCTA CGCGCAGAGC GCGCTGGAAG ACCTGCGCAA CGAGATCGGC
GAATCCTGCG CGCTGGCGGT GCTCGACGAG GACGAAATCG TCTATGCGCT GCGGCTGCCG
GCGCGGCGCA TTCTGTCGGC CAATCTCGGC ATCGGCAGCC GGCTGCCGGC GCATGTGGTG
TCGCTCGGCC GGGTGCTGCT GGCATCGCTG CCGCCGGACA AGCTGCAGGC CTATCTGACC
CGGGCCGAGC TGCGCAAATT GACGCCGCGC ACCATCGTCG ATCCGGTCGC GCTGGCAGAG
CAGCTGCAGC GCACCCGCGA GCAAGGCTAC GCCTGGATCG ACGGCGAACT CGATCCGGCG
ATCTGCGGCA TCGCGGTGCC GGTGCGCGAT CATCGCGGCG CCGTAGTGGC CGCGGTCAGT
ATCAACACCA TCTCCGGCTC GATCGATGAA GACGGCGCCA AGCAGCGCTT CCTCACCGCG
CTGCGCCGCA CCGCGCAGGA CATCCAGAGC CAGACCGCGG CGGCGGCGTA G
|
|---|
| Protein sequence | MAKESDGFVR AIARGFSVVE ALGRPPGRHT LSEAAVSAGL NRATARRMLA TLVALNYCEV
EGRYFSLRPR ALGLGLSYLN ALPYWGYAQS ALEDLRNEIG ESCALAVLDE DEIVYALRLP
ARRILSANLG IGSRLPAHVV SLGRVLLASL PPDKLQAYLT RAELRKLTPR TIVDPVALAE
QLQRTREQGY AWIDGELDPA ICGIAVPVRD HRGAVVAAVS INTISGSIDE DGAKQRFLTA
LRRTAQDIQS QTAAAA
|
|---|
| |