| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3974 |
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| Symbol | |
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| ID | 3969397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4425481 |
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| End bp | 4427361 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637927078 |
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| Product | peptidase M3B, oligoendopeptidase-like clade 3 |
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| Protein accession | YP_533819 |
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| Protein GI | 90425449 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.221188 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.896374 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAG CAGCGACCTC CCGAGCCAGC AAATCCGTCC GCAAACCGGC CCCGCGCACC
GGCGCCGCCA AGAAGACCCC GCCGAGCCGC AAGCCGCAAG CCAAGGCCGC GCAACTGCCG
GAATGGGATT TGGCCGATCT CTATACCAGC ATCGATTCGC CGGAGGTGGC GCGCGATCTC
GACAAGATCG ACGCCGACTG CATCGCCTTC GAGCACGACT ACAAGGGCAA GCTCGCCGAG
GAGACCGCCA AGGGCGGCGG CGGCGTCTGG CTCGCCGAGG CGGTGGCGCG CTACGAGGCG
ATCGACGATC TCGCCGGACG GCTGGCCTCC TATGCGGGGC TCATTCATGC CGGCGACAGC
GTCGATCCGA AGCTGTCGAA ATTCTACGGC GACGTCTCCG AGCGGCTGAC CGCGGCCTCG
GTGCATCTTT TGTTCTTCGC GCTCGAACTC AACCGGGTCG ACGACGCGGT GATGGAGATG
GCGATGCAGG CCCCCGAGCT CGGGCATTAC CGGCCGTGGA TCGAGGACAG CCGCAAGGAC
AAGCCGTATC AGCTCGAGGA CCGCATCGAG CAATTGTTTC ACGAAAAGTC GCAGACCGGC
TACGGCGCCT TCAACCGGTT GTTCGACCAG ACCATTTCGG CGCTGCGCTT CAAGCTCGGG
GCGAAGGAAT TGGCGATCGA GCCGACGCTG ACGCTGCTGC AGGACCGCGA TCCGCAAAAG
CGCAAGGCGG CGGGGCAGGC GCTGGCCAAG ACCTTCAAGG CCAATGAGCG CACCTTCGCG
TTGATCACCA ATACGCTGGC CAAGGACAAG GAAATCTCCG ACCGCTGGCG CGGTTTCGAG
GACGTCGCGG ATTCCCGGCA TCTGGCCAAC CGGGTCGAGC GCGAGGTGGT CGACGCGCTG
GTCGCCTCGG TGCGCGCCGC CTATCCGAAG CTGTCGCATC GCTATTATGC GTTGAAGGCG
CGCTGGTTCG GCAAGAAGCA ATTGGCGCAT TGGGACCGCA ACGCGCCGCT GCCGTTCGCC
GCCACCGGCA CGATCGGCTG GCCGGAAGCC AAGGATATGG TGCTGACCGC CTACACGGCG
TTCTCGCCGG AGATGGCGAA GATCGCCGAG CGCTTCTTCA CCGATCGCTG GATCGACGCG
CCGGTGCGGC CCGGCAAGGC GCCGGGCGCG TTCTCGCATC CGACCACGCC CTCGGCGCAT
CCTTATGTGC TGATGAACTA TCAGGGCAAG CCGCGCGACG TGATGACGCT CGCCCATGAA
CTCGGCCACG GCGTGCACCA GGTGCTGGCG GCGAAGAACG GCGCCTTGAT GGCGCCGACG
CCGCTGACGC TGGCGGAGAC CGCGAGCGTG TTCGGCGAGA TGCTGACCTT CAAGCGGCTG
CTCGGCCAGA CCAAGAGCTT AAAGCAGCGT CAGGCGCTGC TCGCCGGCAA GGTCGAGGAC
ATGATCAACA CCGTGGTGCG GCAGATCGCG TTCTATTCGT TCGAGCGCGC GATCCACACC
GAGCGCCGCA ACGGCGAATT GACCGCGCAG CGGATCGGCG AGATCTGGCT CAGCGTGCAG
GGCGAGAGCC TTGGCCCCGC GATCGACATC AAGCCGGGCT ACGAGAACTT CTGGATGTAC
ATCCCGCACT TCATCCATTC GCCGTTCTAC GTCTACGCCT ATGCGTTCGG GGATTGCCTG
GTGAACTCGC TCTACGCGGT TTACGAGAAC GCCCAGGAAG GCTTTGCCGA ACGCTATCTG
GCGATGCTGT CGGCCGGCGG CACCAAGCAT TACTCCGAAC TGCTGCAGCC GTTCGGGCTC
GACGCCCGCG ATCCGACCTT CTGGGACGGC GGGCTGTCGG TGATCGCCGG GATGATCGAT
GAATTGGAGG CAATGGGGTA G
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| Protein sequence | MAKAATSRAS KSVRKPAPRT GAAKKTPPSR KPQAKAAQLP EWDLADLYTS IDSPEVARDL
DKIDADCIAF EHDYKGKLAE ETAKGGGGVW LAEAVARYEA IDDLAGRLAS YAGLIHAGDS
VDPKLSKFYG DVSERLTAAS VHLLFFALEL NRVDDAVMEM AMQAPELGHY RPWIEDSRKD
KPYQLEDRIE QLFHEKSQTG YGAFNRLFDQ TISALRFKLG AKELAIEPTL TLLQDRDPQK
RKAAGQALAK TFKANERTFA LITNTLAKDK EISDRWRGFE DVADSRHLAN RVEREVVDAL
VASVRAAYPK LSHRYYALKA RWFGKKQLAH WDRNAPLPFA ATGTIGWPEA KDMVLTAYTA
FSPEMAKIAE RFFTDRWIDA PVRPGKAPGA FSHPTTPSAH PYVLMNYQGK PRDVMTLAHE
LGHGVHQVLA AKNGALMAPT PLTLAETASV FGEMLTFKRL LGQTKSLKQR QALLAGKVED
MINTVVRQIA FYSFERAIHT ERRNGELTAQ RIGEIWLSVQ GESLGPAIDI KPGYENFWMY
IPHFIHSPFY VYAYAFGDCL VNSLYAVYEN AQEGFAERYL AMLSAGGTKH YSELLQPFGL
DARDPTFWDG GLSVIAGMID ELEAMG
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