Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3955 |
Symbol | |
ID | 3969242 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4407464 |
End bp | 4410151 |
Gene Length | 2688 bp |
Protein Length | 895 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637927059 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_533800 |
Protein GI | 90425430 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGGCA ACAATTGGCA AGTCGGTGGC GTAACTAAAC TTGCTGTGTC GGTTGTAGGT TGCCTCGTTG CCACCGCTGC GACCAGCGGT GCGGCGAGGG CGGGGTTCGA ATTGGCTCCG ACGCGCTACC TCGGGTCGTT TGACGCCGAG ATCCTCTGGG AATTGCTGAT CGGCGGCTTC GTCGCGGTCT CGTTTCTGGC CTCCGTGGCG ATCTGGGCGA TGTCCAGCCT GCGCCGGATC AGCCGCGCGC ATCATCGCCG CGGCCTGTTC GTCAGCTCTG CCCTGAATAG TTTGAATCAG GGCGTGGTGA TGGTCGACGC GCTCGGCAAG GTGATGTTCT GCAACGACCG TTACCTGGAA ATCTACGGGT TGAGGCGCTC GGATATTGTT CCCAACATGA CCGGCCTCGA ATTGCTCGAG CTGCGCCGCA GCCGCGGCAT GCTGGATGTC GCCACCGAGG AGTTCTACCG CACCGCCTCC GGTCCCAATG GGCATATCGC CGATCTGCCC AACGGGCGAT CGGTGCTGGT GAAGTTCTCC AACCTCGCCA ATGGCGGCTC GATCGCGACC CACGACGATT GCACCCCGCA ACGCGAACTG TCCCGGCAGC TGGCGACCGC CAAACAGTTC CTGGAATCGG TGATCGACAA CATCCCGGTC TGCGTCGCCG CCAAGGCGAT CGAAGACGGC CGCTACATCC TGGCCAACCG CGCCTTCGAA CGGTTCTGCG GGTTGCCGCG CGATCGCATC CTCGGCAGGC GCACCGCCGA ACTGTTTTCC GCGGCGACGG CGGCCACCAT CGGCGAAGCC GACCGCATGG CGATCGATTC GCCGCACGAT CCGCTGCGGG GCGAATTGAC GGTCGACGTC GGCGGCGGCG ACCGCGTCAT CGACAACAAC TGCGTGGTGG CGTGCGACGA CAAGAACCGG CCGGAATTTC TGATCGCGCT GTTCGAGGAC ATCACCGAGC GGCGGTCGCT GTCGCAGGAG CTCGTCAACA CCAAGAAATT CCTTGAGCTG GTGGTCGACA ATATTCCGAT CTCGCTGACC GTGCAGAGCA CGCAGGACGG GCGATACCTG TTCGCCAATC GCGGCGCCGA GGCCATCCTC AACCGCTGCC GCGAGGACGC CGTCGGGCTG TCGGCCTTGG ATATCTTCAA TCCCAAGGAA GCCAAACTGA TCGCCGAGCG CGACGCCAAT GCGATCCGCC GCCGCGATCT GATGACCGAG GAGCACCCGA TCAGCACCAA GGACGGGCTG CGGCTGTTCC TGACCCGCCG CGTCACCGTG GTCGACGGCG AGGGCGCGCC GCAATACCTG ATCAAGACCC ATGAGGACAT CACCGACCGG CGGCAGACCG AAGCACAGAT GGCGCATATG GCCTACCATG ACGGGCTGAC CGACCTGCCG AACCGGCTGG CGTTCCTGCA AGCGCTGGCG CAGATGATCG AGGCTTGCCG CGATACCACC GAAGAGTTCG CGGTGCTGTC GGTCGATCTC GACGGGCTGA AGGAAATCAA CGACGTGTTC GGTCACGCCG TCGGCGACAA GCTGTTGGTC GAGGTGGCGC GCTGCATCCA GCTGTCGTCG CGCGGCGGCG TGGTGTCCCG CCTCAGCGGC GACGAGTTCG GGTTGATCAT CGACGGCCCG CAGCCGGCCG CGGCGATGCA TCTCGCCGCA GAGGTTGCCA AAGCGGTGGC CGGAGGGTTC CTGATCGACG GCAAGCAGGT CCGGATCGGC GTCACCACCG GCGTCGCGGT GTTCCCGGCC AATGGCGCCG ATGCGGCCTC GCTGCTCGCC AATGCCGGCG CGGCGCTGTT CCGCGCCAAG GCGCGGATGC GCGGCTCGGT CAGCCTGTAC GAACCGGAGA TGGATCGGCA GATCCGCGAC CGCCGCATCC TGCACCAGGA CCTCTCCGCC GCGATCAAGA ACGGCGAGAT GTCGCTGCAC TACCAGCCGC AGGCCAACGG ATGCACCCGG ATCGGCGGCG ACGATTTCGT CGGCTTCGAG GCGCTGGCGC GCTGGTTCCA TCCGACCCGC GGCTTCGTGC CGCCGAGCGA CTTCATTCCG CTCGCCGAAG AGAGCGGGCT GATCGTCGAG ATGGGCGAAT GGATTTTGCG CGAGGCCTGC CGCGAGGCGG CGTCCTGGAG CAAACCGCTG CAGATCGCCG TCAATCTATC GCCGGCCCAG TTCCTCAACA GCGACCTGGT GAGCGCGGTG CACACCATCC TGCTGGAAAC CGGGCTGAAG CCGAGCCGGC TCGAACTGGA AATCACCGAA GGCGTGCTGA TCGAGGATTT CGACCGCGGC TTGTCGCTGC TGCGCCGCCT GACCGCGCTC GGTGTGCGGA TCTCGATGGA CGATTTCGGC TCCGGCTATT CGTCGCTGAC CTATCTGCAG GCGTTCCCGT TCGACAAGAT CAAGATCGAC CGCGCCTTCG TGATGAACCT CGGGCACAAT CCGCAATCCG CCGCGATCGT CCGCGCGGTG ATCGGACTCG GCCACGGGCT CGGCGTGTCG ATCGTCGCCG AGGGCGTCGA AACCCAGCAG CAGCTCGACT TCCTGGTCGC CGAAGGCTGC GACGCGGTGC AGGGCTATTT CATCGGCAAG CCGGCGCCGA TCGAACAATA CTCCCGGCTG GTCGGCCTCA CCGGCCCGCG TCTGGCGACC TCGCGCGCCG TCGGCTGA
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Protein sequence | MAGNNWQVGG VTKLAVSVVG CLVATAATSG AARAGFELAP TRYLGSFDAE ILWELLIGGF VAVSFLASVA IWAMSSLRRI SRAHHRRGLF VSSALNSLNQ GVVMVDALGK VMFCNDRYLE IYGLRRSDIV PNMTGLELLE LRRSRGMLDV ATEEFYRTAS GPNGHIADLP NGRSVLVKFS NLANGGSIAT HDDCTPQREL SRQLATAKQF LESVIDNIPV CVAAKAIEDG RYILANRAFE RFCGLPRDRI LGRRTAELFS AATAATIGEA DRMAIDSPHD PLRGELTVDV GGGDRVIDNN CVVACDDKNR PEFLIALFED ITERRSLSQE LVNTKKFLEL VVDNIPISLT VQSTQDGRYL FANRGAEAIL NRCREDAVGL SALDIFNPKE AKLIAERDAN AIRRRDLMTE EHPISTKDGL RLFLTRRVTV VDGEGAPQYL IKTHEDITDR RQTEAQMAHM AYHDGLTDLP NRLAFLQALA QMIEACRDTT EEFAVLSVDL DGLKEINDVF GHAVGDKLLV EVARCIQLSS RGGVVSRLSG DEFGLIIDGP QPAAAMHLAA EVAKAVAGGF LIDGKQVRIG VTTGVAVFPA NGADAASLLA NAGAALFRAK ARMRGSVSLY EPEMDRQIRD RRILHQDLSA AIKNGEMSLH YQPQANGCTR IGGDDFVGFE ALARWFHPTR GFVPPSDFIP LAEESGLIVE MGEWILREAC REAASWSKPL QIAVNLSPAQ FLNSDLVSAV HTILLETGLK PSRLELEITE GVLIEDFDRG LSLLRRLTAL GVRISMDDFG SGYSSLTYLQ AFPFDKIKID RAFVMNLGHN PQSAAIVRAV IGLGHGLGVS IVAEGVETQQ QLDFLVAEGC DAVQGYFIGK PAPIEQYSRL VGLTGPRLAT SRAVG
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