| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3954 |
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| Symbol | |
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| ID | 3969241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4406204 |
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| End bp | 4407349 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637927058 |
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| Product | spermidine/putrescine ABC transporter ATP-binding subunit |
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| Protein accession | YP_533799 |
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| Protein GI | 90425429 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.320364 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGAGC AAGGGGTAAC GACCGACGCA GCGCCGCCGT CGCCCGACGT GCCGCTGTTG
CGGATCGAGG CGGTCGAGAA GCGGTTCGGC GGCTCGGTCG CCGTGGACGG GCTGTCGCTC
GACATCAAGG CCGGGGAGTT CTTCGCGCTG CTCGGCCCGT CGGGCTGCGG CAAGACCACG
CTGTTGCGGA TGCTCGCCGG GTTCGAGACC CCGGACCGCG GTCGGATCCT GCTCGACGGA
CAGGATGTCG CTTTGGTGCT GCCGCATCAG CGCCCGGTCA ACATGATGTT CCAGAACTAC
GCGCTGTTCC CGCATCTCAG CGTCAAAGCC AATATCGCCT TCGGTTTGAA GCGCGCCGGC
CTGAAGCGCG CCGAGATCAA GGCGCGGATC GCCGAGATGC TGGCGCTGGT GCGGCTCGAC
GGCCTCGCGC ATCGCCGCCC CGATCAGCTC TCCGGCGGCC AGCAGCAGCG GGTGGCGCTG
GCGCGAGCGC TGGCGCGGCG GCCAAAGCTG TTGTTGCTCG ACGAACCTCT GGCGGCGCTC
GACAAGAAGT TACGCGAGGC CACCCAGCGC GAGCTGATCG AGCTGCAGCG GCGGCTCGGC
ACCACCTTCG TCATCGTCAC CCACGACCAG GACGAGGCGA TGACGGTCGC CGACCGCATC
GGCGTGATGT CGGCCGGCCG GCTCGAACAG GTGGCGGCGC CGCGGCAGCT CTACGAGGCC
CCGGCGTCGC GCTGGGTCGC CGAATTCGTC GGCGACGTCA ACATTCTCGA CGGCCGCATC
GCGGCGCAGG ACGCCCACCG CCTGACGGTG GCCACGGCCG ATGCCGTTAC GCTCAGCGTG
GCGCCGCCGC GGCAGCCGGT GGCGACCGAT CGCGCGGTCA GCGTCGCGAT CCGGCCGGAG
AAGATCAAGC TGTCGCGCCG CGGCCCGAGC CCCGACGCCG CTGGCGCGCT CAACCGGCTC
GATGGCGTGG TCAGCGAGGT GAGCTATCTC GGCGGCCTCA CCAGCTACAC CGTCAAGCTC
GACGCCGGCG CCAGCCTGCG GGCGTCGCTG GCCAACACGG CGCGGGTCGA GGTCGACGAG
TTTTCCCGCG GCCAGCACGT GGTGGCGTGG TTCGCGCCCG ACGATTGCGT GGTGCTGCAG
CGATGA
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| Protein sequence | MTEQGVTTDA APPSPDVPLL RIEAVEKRFG GSVAVDGLSL DIKAGEFFAL LGPSGCGKTT
LLRMLAGFET PDRGRILLDG QDVALVLPHQ RPVNMMFQNY ALFPHLSVKA NIAFGLKRAG
LKRAEIKARI AEMLALVRLD GLAHRRPDQL SGGQQQRVAL ARALARRPKL LLLDEPLAAL
DKKLREATQR ELIELQRRLG TTFVIVTHDQ DEAMTVADRI GVMSAGRLEQ VAAPRQLYEA
PASRWVAEFV GDVNILDGRI AAQDAHRLTV ATADAVTLSV APPRQPVATD RAVSVAIRPE
KIKLSRRGPS PDAAGALNRL DGVVSEVSYL GGLTSYTVKL DAGASLRASL ANTARVEVDE
FSRGQHVVAW FAPDDCVVLQ R
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