| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3904 |
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| Symbol | |
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| ID | 3969267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4334630 |
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| End bp | 4336381 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637927007 |
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| Product | hypothetical protein |
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| Protein accession | YP_533749 |
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| Protein GI | 90425379 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.454876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAGC CCAATGATGA TTTGCGTCTG CGTCCGGGCC GTATCCGTGA TGGCGGCCGC
GGTGCGGTCC GACAGAAGAG CTTTGTCGGG CAGGTCATGC GCGCCGCCAA AAAGGCAGGG
CACTCGGGGA AAGGCTTTGG CCGGGAAGGG CGAGGCACGG CCTCCCGGTT CGGCCGGGGG
CGTTCCGCGG CGCTGGCTTT GTCGCTTCGG TCGCCATCGC GGCGGGTGGT GGTGAAGGCG
CGGGTGGTGC GGCATCGTGG CAGCCGTTTC CGATCGGCGC CGCTGACCAA GCATGTCATC
TATCTCAAGC GCGAGGGAGT CACTCGGGAT GGCGCGGATG TCCGGATGTT CGATGCCAGG
TCCGACGCCG CAGATGAACG CGGCTTCGCT GAGCGATGCG AGGATGACCG TCATCATTTT
CGTTTTATCG TCTCACCGGA AGACGCGCCC GAGATGCAGG ATCTGCGAGC CTTTACCCGG
GAACTGATGG TGGATGCCGA ACGCGATCTC GGCACCAGGC TTGACTGGAT CGGCGTCGAT
CACTGGAACA CCGACAATCC GCACGTCCAC ATCCTGGTCC GCGGGCGTGC CAATGACGGC
CAGGACCTCG TCATCAGCCG CGACTACATC AGTCGTGGAA TTCGGGCCCG CGCCGCCGAA
CGGGTCACGC TTGAGCTGGG TCCACGCAGT GAGCGGGAGA TCCGATCCAC GCTCGAGAAG
GAGGTCGATG CCGAGCGTTG GACCGGTCTC GACCGCGCAC TGCAAACCGC AGCCGATGAG
GGAGCGGGGA TGGCCGATCT GAGGCCTGAC TCAGCGGACA ATGATCCGGA ACTGCGGCGG
CTGATGATCG GCAGGGTGAC GAAGCTGGAG CGCCTCGGAC TTGCCGAGCA AATCGGGCCG
GGCTGCTGGA GCTTGAAGCC CGGTCTCGAG GATACGTTGC GCGATCTATC CGTCCGCGGC
GACATCATCA AGACCATGCA CCGGGCGATG GCGGGACTCG GTCGCGAGCC GGATGTGTCG
AGGTTCGCGC TTCATGGCGA TGAGGTCGCC GATCCGGTGC TTGGCCGGCT GATGGCGCGC
GGGCTCCATG ACGAGTTGAG GGGCTCCGCC TATGCGGTGG TCGATGGAGT CGATGGCAGG
ACGCATCACC TTCGCTTTTC CGATCTTGAA ATGACCGGCG ACGCCGCGCC CGGCGCCATT
GTCGAAGCGC GAGCCTATGA CGATGCCAAC GGCAGGAAAC GGCTGTCGTT GGCCGTCCGG
TCGGATCTCA GCTTGCAGGA CCAAGTTACA GCGCCGGGCG CGACCTGGCT CGACCGTCAA
CTCATTTCCC GCGAACCGGC GATCGGTGGC GGCGGGTTCG GAGCCGAGGT GCGCGACGCA
ATGGAGCGTC GCGTCGATCA TCTGGCGAGT GAGGGGCTCG CGAGCCGGCA TGGAAGCCGG
CTCGTGTTTG CGCGGGATCT GCTCGATACG TTGCGTCGAC GCGAGCTGGA TGCCGCGGCC
AAGAGAATTG GTGCCGAGAA CGGGCTCGCC TATCGTTCAG CCGCAGAGGG CGCATACGTT
GCCGGCATCT ATCGTCAACG TCTCACGCTT ATCAGCGGCC GGTTCGCGAT GATCGACGAC
GGCCTCGGCT TTCAACTGGT GCCTTGGCGG CCGGCATTGG AGCAGCAACT CGGCCGCCAC
ATCTCCGGCA TCGTGAAGCC GGGCGGAGGG GTGGACTGGA GCTTTGGCCG AAAGCGCGGG
CTCGGCCTCT AA
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| Protein sequence | MKQPNDDLRL RPGRIRDGGR GAVRQKSFVG QVMRAAKKAG HSGKGFGREG RGTASRFGRG
RSAALALSLR SPSRRVVVKA RVVRHRGSRF RSAPLTKHVI YLKREGVTRD GADVRMFDAR
SDAADERGFA ERCEDDRHHF RFIVSPEDAP EMQDLRAFTR ELMVDAERDL GTRLDWIGVD
HWNTDNPHVH ILVRGRANDG QDLVISRDYI SRGIRARAAE RVTLELGPRS EREIRSTLEK
EVDAERWTGL DRALQTAADE GAGMADLRPD SADNDPELRR LMIGRVTKLE RLGLAEQIGP
GCWSLKPGLE DTLRDLSVRG DIIKTMHRAM AGLGREPDVS RFALHGDEVA DPVLGRLMAR
GLHDELRGSA YAVVDGVDGR THHLRFSDLE MTGDAAPGAI VEARAYDDAN GRKRLSLAVR
SDLSLQDQVT APGATWLDRQ LISREPAIGG GGFGAEVRDA MERRVDHLAS EGLASRHGSR
LVFARDLLDT LRRRELDAAA KRIGAENGLA YRSAAEGAYV AGIYRQRLTL ISGRFAMIDD
GLGFQLVPWR PALEQQLGRH ISGIVKPGGG VDWSFGRKRG LGL
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