| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3894 |
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| Symbol | |
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| ID | 3969257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4324933 |
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| End bp | 4325613 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637926997 |
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| Product | conjugal transfer protein TrbF |
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| Protein accession | YP_533739 |
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| Protein GI | 90425369 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.178974 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAAGA GATCTTCCGT ACACTACGGC CGCACGCCCA AACCCGAAAC GCCGTATCAG
AAGGCTGCGC AAGTCTGGGA CGAGCGGATC GGCTCGGCAC GGGTCCAGGC CAAAAACTGG
CGCCTGATGG CGTTCGGCTG CCTGCTGCTA TCCGGCGGGC TTGCCTCCGG TTTGGTCTGG
CAATCGGTCC GCGGCACCGT CACGCCGTGG GTGGTGGAGG TCGATCGTCT CGGTCAGGCC
CAGGCCGTGG CGCCTGCGGA CAGCCGGTTT CAGCCGACCG ATCCGCAGAT CGCATTCCAC
CTCGCGCGCT TCATTGAGGA AGTTCGCGGT CTTCCCGCCG ACGGCATTGT GCTGCGGCAG
AACTGGCTTC GCGCCTACGA CTTCACCACC GATCGGGGTG CTGCGGCGCT GAACGATTTT
GCCCGCACCA ACGATCCCTT CGCCAACCTC GGAAAGCTTC AGATCTCGAT CGAAGTTTCC
AGTGTGATCC GTGCCTCGCC GACCTCGTTC CGCGTCGCCT GGATCCAGCG CGCCTATGAG
AACGGCAGCC TGAGCGTCAC CGAGCGCTGG ACCGCGATCG TCACCGTCGT GATCGACGCG
CCGCGAGATG CGGATCGTGT GCGCAAGAAT CCACTTGGGA TCTACGTCAA CGCCATCAAC
TGGTCGAAGG AGCTTGGATG A
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| Protein sequence | MFKRSSVHYG RTPKPETPYQ KAAQVWDERI GSARVQAKNW RLMAFGCLLL SGGLASGLVW
QSVRGTVTPW VVEVDRLGQA QAVAPADSRF QPTDPQIAFH LARFIEEVRG LPADGIVLRQ
NWLRAYDFTT DRGAAALNDF ARTNDPFANL GKLQISIEVS SVIRASPTSF RVAWIQRAYE
NGSLSVTERW TAIVTVVIDA PRDADRVRKN PLGIYVNAIN WSKELG
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