Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3867 |
Symbol | |
ID | 3969134 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 4298460 |
End bp | 4299662 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637926975 |
Product | phage integrase |
Protein accession | YP_533717 |
Protein GI | 90425347 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGTCT CAAATATAAC GATCCGCACA GTGCAAGCAC TGAAGCCGGG CGAGACTATT TGGGACGCAG ACCACCGCGA AGCGGTGCGG GGCTTTGGCG TTCGGCGTCA ACGTGATCAA GCGACCTACG TTCTCAAGTA CCGATTGTTC GGTCGGCAGC GCTTCGTGAC CATCGGTCCT CACGGCTCCC CTTGGACACC AGAGCTTGCA CGCAAGGAGG CCAAGCGGCT TTTGGGCCTG GTTGCGATTG GCAAAGACCC GGCGGACGAG AAAGCCAAGG CGCGCCTGCA GGCAGCCGAC ACCCTCCGAG CAATCGCGGA TCAATATCTC CGGAACGCCA AACAAAGGCT GAAGCCCCGG ACCTATTCGG AGATAGAACG CTACTTGTTG GTCAGTTGGA AACCCCTCCA TCCGGTCTCG GTCTTCCAGA TTACTCGCCG CCATATCTCG GCTCGTATCG CTGACTTCGA ATCAGCTCAT GGAGCGGTCT CAGCAGCCCG CGCCCGCACG GCCCTGTCCT CAATGTTCAA CTGGGCAATA CGCGAGGGCC TTGAGATCGC TGCGAACCCG GTTCTCGGCA CTAACCGACC CGCGCAGCCG GGAAGCCGCG AACGGGTCCT CACGGAGACG GAGCTATCAG CCATCTGGCA CGCCTGTGGC GATGACGATT ACGGACGCAT TGTGCGTTTG TTGCTGCTCA CAGCACAACG CCGTGATGAA GTGGGCAGCA TGCAATGGGC CGAACTTGAT ACCTTTTCGG GGCTCTGGAC GCTGCCAAGC GCCCGGACCA AGAACCATCG CGAGCATTCG CTACCATTTG TTCCCGCCGC CCTGGCCCTA CTCCCACCCC GCCGAGATGG CCTAGACTTC CTCTTTGGTG ACGGACCCCG ACGCAGCGGT GACCCGCATC GTGGGTTCTC CGGCTGGTCA AAGTCGAAGG CGGCGCTTGA TGCACGGATC GCGGAAGCGC TCGGCAACCC CCTGCCCCAT TGGACAGTTC ACGATCTTCG GAGGTCGGCA TCCACGGTGA TGGCCGACCG GCTTGGCGTG TTGCCACACA TTGTGGAGGC GATCCTAAAC CACGTCAGCG GCCACCGGGC TGGCGTTGCC GGAGTATATA ACCGCGCTCG GTATGCGACG GAGATGCGCG AGGCGCTTGA ACGCTGGACA GAGCACGTTG TGGCCTTGCC AGCCCAAAAA TGA
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Protein sequence | MAVSNITIRT VQALKPGETI WDADHREAVR GFGVRRQRDQ ATYVLKYRLF GRQRFVTIGP HGSPWTPELA RKEAKRLLGL VAIGKDPADE KAKARLQAAD TLRAIADQYL RNAKQRLKPR TYSEIERYLL VSWKPLHPVS VFQITRRHIS ARIADFESAH GAVSAARART ALSSMFNWAI REGLEIAANP VLGTNRPAQP GSRERVLTET ELSAIWHACG DDDYGRIVRL LLLTAQRRDE VGSMQWAELD TFSGLWTLPS ARTKNHREHS LPFVPAALAL LPPRRDGLDF LFGDGPRRSG DPHRGFSGWS KSKAALDARI AEALGNPLPH WTVHDLRRSA STVMADRLGV LPHIVEAILN HVSGHRAGVA GVYNRARYAT EMREALERWT EHVVALPAQK
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