Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3822 |
Symbol | |
ID | 3969281 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 4252493 |
End bp | 4253704 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637926932 |
Product | diguanylate cyclase |
Protein accession | YP_533675 |
Protein GI | 90425305 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAGCG TCCCGACCCT GTGGGTGGTT GTCGTCGTCA ACTTTCTGGC GCTGGGTCTG GTCTGGACCT ATGTGACGCG CAACTATCCG AACTTCATCG CGGCGCCGTA CTGGACCGCG GCGGCGTTCG TCGCCGCATC GGCCGCGGCC GTCGCGCTGT TGCGCGGCGT GTTCGATTCG GCGCTGCCGC AGGTGTTCGG CAGCACCATG ATGATCATGG CCTGCTGCCT CGGCAGCATG GGCATGGACC GCTTCTTCGA CCATCCGGCA CGATGGCGGA TCACCTGGAG CATCGTCGGA CTGAGCGTCG CCGCGTTCAG CTATTTCAGC TTCATCCATG TCAGCATGCC GATGCGCATG GTGGTGTATT CGATCGGCGA GTCGGTGCCG CTGGCGCTGT CGCTGCGCCA CGTGATGTGG CGGCAGGACA AGCAATGCTA CCCCGGTTCC CGCATGACCG CCGCGATTGC CGGCGCGATG ATCGTGGTGT TGATCGTGCG CTCGATCGCG GCGCTGACCG GCATCGGCGG CGAACTCACG GTCCTGCACT TCAATGCCTT CCAGGCCGTC ATGGTGCTGC TGCTGGTGTT CTTGTCGATG ATGTGGTGCT TCGGCTTCCT GCTGATGACG ATCGATCGGT TGCGCGCCGA GGTGGCGAAG CTCGCGATGC TGGACGACCT GACCGGCGCC GCCAACCGCC GCCAATTGCT GCAGCGCCTG GAAGAGGAAT GCGCGCTGTC GCGGCGCACC GGCGGGCCAT TCGCGCTGCT GGCGATCGAC CTCGACGGCT TCAAGGCGAT CAATGACGGC TACGGCCACG GCACCGGCGA CGCCTGCCTG CGCGACTTCA CCCGCACCGC GCAGAGTTGC CTTCGCCCCG GGGATCTGTT GGCGCGGCTC GGTGGCGACG AGTTTTCGGT GCTGCTGCCG GCGACCACGC TGCGCGAGGG CGCGATGATC GCCCGCCGGA TCCTGGAAGC CTGCCGGGGA ACCGGCCAGG GCACCGCGAT CACGCTGTCG GTGTCGATCG GCGTCGCGCA GTGGACCAAG CTGGTCGGTG CCGACGCCGA ACGGCTGATC GCGGCCGCCG ACCATGCGCT TTACGCCGCC AAGCACGGCG GCAAGAATCG CCACGCGGTC TATGATCCCA CGGTCGACCA TCCGGTGAAC GCAGCGTTCG ACGGAATGCC GCCGCTGCGC AAGACCGCAT AA
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Protein sequence | MLSVPTLWVV VVVNFLALGL VWTYVTRNYP NFIAAPYWTA AAFVAASAAA VALLRGVFDS ALPQVFGSTM MIMACCLGSM GMDRFFDHPA RWRITWSIVG LSVAAFSYFS FIHVSMPMRM VVYSIGESVP LALSLRHVMW RQDKQCYPGS RMTAAIAGAM IVVLIVRSIA ALTGIGGELT VLHFNAFQAV MVLLLVFLSM MWCFGFLLMT IDRLRAEVAK LAMLDDLTGA ANRRQLLQRL EEECALSRRT GGPFALLAID LDGFKAINDG YGHGTGDACL RDFTRTAQSC LRPGDLLARL GGDEFSVLLP ATTLREGAMI ARRILEACRG TGQGTAITLS VSIGVAQWTK LVGADAERLI AAADHALYAA KHGGKNRHAV YDPTVDHPVN AAFDGMPPLR KTA
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