| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3739 |
|---|
| Symbol | |
|---|
| ID | 3970334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4164063 |
|---|
| End bp | 4165304 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637926849 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_533593 |
|---|
| Protein GI | 90425223 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.101854 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGCAG CCCAACTCGG CGCATGGCAG CGCTGGTCGA TCCTGGCGGG CGCCGCGATC
CTGCTGAGCC TGGCGATGGG GATGCGGCAA AGCTTCGGGC TGTTTCAACC CTCGGTCATT
CGCGACATCG GCATCACCTC GGCGGATTTC TCGCTCGCCA CCGCGCTGCA GAACGTGGTC
TGGGGCGTCA CCCAACCCTT CGTCGGCATG TTCGCCGATC GCTACGGCAC CCGCTATGTG
ATGCTCGGCG GCGTGCTGAT CTATGCCGCG GGTCTGGTGT TGATGATGGT CGCGACCTCG
GCGTTGGTGT TCACGCTGGG CGCCGGGTTC TGCGTCGGGC TGGCGCTGTC CTGCACCGCG
TCGAGCCTGA CCATGACGGT GACCTCGCGC ACGGTGTCGG CGGCCAAGCG CAGCGTCGCG
ATGGGCGCGG TGTCGGCGGT CGGATCGCTC GGGCTGGTGA TCGCCTCGCC ATTGGCGCAG
ACGCTGATCT CGACCTCGGG CTGGAAGATG GCGCTGATCG GCTTTCTCGG TCTCGCCGCG
GTGATGCTGC CATCGGCATT GTTCGCCGGA CGCTCCGACA AAATCGAGAT CGACAAGGCC
GACGACAGCG AGCAATCGCT CGGCTCCGTG ATGCAATCCG CGCTCGGGCA TTCCGGTTTC
GTGGTGATGT CGCTGGCGTT CTTCGTCTGC GGGTTGCAAT TGGTGTTCAT TACCACGCAT
CTGCCGAACT ATCTGGATAT TTGCGGGCTC GATCCGTCGC TCGGCGCCAC TGCGCTCGCC
ATCATCGGGC TGTTCAACGT GATCGGCTCC TATGCCTGCG GCTGGCTCGG CGGCCGCTAT
CCGAAACAGC TGCTGCTCGG CGCGATCTAC ATCATCCGCT CGGTGGCGCT CGCCGCCTAT
TTCTATTTTC CGGCGTCGGC CGCCTCCACC ATGGTGTTCG CCGCGGTGAT GGGATCGCTG
TGGCTCGGCG TGGTGCCGCT GGTCAACGGG TTGGTGGCGC AACTGTTCGG GCTGCGCTTC
ATGGCGACGC TGGCCGGCAT CGCCTTCCTC AGCCATCAGG CCGGCTCGTT CCTCGGCGCC
TGGGGCGGCG GGATGATCTA CGACCGGCTC GGCAGCTATG ACGCTGCCTG GCAAGCCGCG
GTGCTGATCG GATTGATCGC CGGCGCTTTT CAGATGTTGA TGAACGTACG TCCACCGCAG
CGTCGCGATG CGCTGGGCGG TGCGGTGGCC AATGCGGCGT GA
|
|---|
| Protein sequence | MRAAQLGAWQ RWSILAGAAI LLSLAMGMRQ SFGLFQPSVI RDIGITSADF SLATALQNVV
WGVTQPFVGM FADRYGTRYV MLGGVLIYAA GLVLMMVATS ALVFTLGAGF CVGLALSCTA
SSLTMTVTSR TVSAAKRSVA MGAVSAVGSL GLVIASPLAQ TLISTSGWKM ALIGFLGLAA
VMLPSALFAG RSDKIEIDKA DDSEQSLGSV MQSALGHSGF VVMSLAFFVC GLQLVFITTH
LPNYLDICGL DPSLGATALA IIGLFNVIGS YACGWLGGRY PKQLLLGAIY IIRSVALAAY
FYFPASAAST MVFAAVMGSL WLGVVPLVNG LVAQLFGLRF MATLAGIAFL SHQAGSFLGA
WGGGMIYDRL GSYDAAWQAA VLIGLIAGAF QMLMNVRPPQ RRDALGGAVA NAA
|
|---|
| |