| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3718 |
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| Symbol | |
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| ID | 3972341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 4138479 |
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| End bp | 4139453 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637926828 |
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| Product | type II secretion system protein |
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| Protein accession | YP_533572 |
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| Protein GI | 90425202 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.202594 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAAT TCATCATCGC GAAATTCCAC GATGTGCGGT TCATGACCAT GCTGCTGGCC
GCGATCGCCG CCAGCGCCAC CGCCTACACG CTGATCACGC CGCTGTTCGC CGGCGAAAGC
CTGTCGAAGC GTATGAAAGC CGTCGCCAGC GAACGCGAGC GGATCCGGCA GCGCGAGCGC
GACCGGCTGT CGAAGACCGA ACGGGTGTCG CTGCGCCAGG CGCCGAAGCA GTTCGTCTCC
AAGGTGGTGG AAGACTTCAA CCTCGGCAAA TGGGTGGCGC AGGAAGCCGC GCGCGACAAG
CTGGTGATGG CCGGCTATCG CGGACACGCG CCCTACGTCA CCTTCCTGTT TTTCCGCATG
GTGATGCCGA TCGCCTTCAT GCTGGCCACC GCGCTGTACA TCTTCGTGAT TTCCCACATG
CAGCAGCCGC TCGGGATCAA GATCGCGATC TGCATCGCCG CGTGCTTCCT CGGCATGCAG
GCGCCGATGC TGTTTCTGAC CAACGCGATT TCAAAGCGCC AGCTGTCGAT CAAGCGGGCA
TTTCCGGACG CGCTGGATCT GCTGCTGATC TGCGTCGAAT CCGGCATGTC GATCGAAACC
GCGTTCCGCA AGGTCGCGAT CGAGATCGGC TCGCAATCGA TCCCGCTGGC CGAAGAGTTC
ACGCTCACCA CCGCGGAATT GTCCTATCTG CAGGATCGCA AGGTGGCTTA CGAGAACCTG
GCCAAGCGCA CCGGGCTCGA AGGCGTCAAA TCGGTCTGCC TCGCCCTGCA ACAGTCGGAA
CGTTACGGCA CCCCGCTCGG ACAGAGCTTG CGGGTGATGG CGCAGGAAAA CCGCGACATG
CGGATGAACG AGGCGGAGAA GAAGGCCGCG GCGCTGCCGC CGAAATTGAC GGTGCCGATG
ATCCTGTTCT TCCTGCCGGT GCTGTTCGTC GTGATTCTGG GGCCGACCGG GATCAAAGTT
GCGACGATGC AATAG
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| Protein sequence | MFEFIIAKFH DVRFMTMLLA AIAASATAYT LITPLFAGES LSKRMKAVAS ERERIRQRER
DRLSKTERVS LRQAPKQFVS KVVEDFNLGK WVAQEAARDK LVMAGYRGHA PYVTFLFFRM
VMPIAFMLAT ALYIFVISHM QQPLGIKIAI CIAACFLGMQ APMLFLTNAI SKRQLSIKRA
FPDALDLLLI CVESGMSIET AFRKVAIEIG SQSIPLAEEF TLTTAELSYL QDRKVAYENL
AKRTGLEGVK SVCLALQQSE RYGTPLGQSL RVMAQENRDM RMNEAEKKAA ALPPKLTVPM
ILFFLPVLFV VILGPTGIKV ATMQ
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